Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20766 * 119.99894 * 2 1 4 4 C 1.50693 * 120.00249 * 179.97438 * 2 1 3 5 5 C 1.50706 * 109.47458 * 179.97438 * 4 2 1 6 6 C 1.38713 * 119.72846 * 270.02477 * 5 4 2 7 7 C 1.36554 * 120.45118 * 179.75667 * 6 5 4 8 8 C 1.40714 * 119.89345 * 0.47301 * 7 6 5 9 9 C 1.41290 * 120.26574 * 179.78288 * 8 7 6 10 10 H 1.08004 * 120.00280 * 154.44986 * 9 8 7 11 11 C 1.39941 * 119.99964 * 334.46108 * 9 8 7 12 12 N 1.30842 * 119.99589 * 334.66003 * 11 9 8 13 13 Si 1.86792 * 120.00272 * 154.67024 * 11 9 8 14 14 H 1.48506 * 109.47360 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47057 * 299.99229 * 13 11 9 16 16 H 1.48500 * 109.47390 * 59.99249 * 13 11 9 17 17 C 1.40996 * 119.46846 * 359.50793 * 8 7 6 18 18 F 1.35098 * 120.22265 * 180.27069 * 17 8 7 19 19 C 1.38010 * 119.55325 * 0.25791 * 17 8 7 20 20 H 1.09000 * 109.47171 * 270.00035 * 1 2 3 21 21 H 1.09000 * 109.46950 * 29.99893 * 1 2 3 22 22 H 1.08994 * 109.46897 * 150.00196 * 1 2 3 23 23 H 1.08999 * 109.47012 * 60.00062 * 4 2 1 24 24 H 1.09002 * 109.47059 * 300.00257 * 4 2 1 25 25 H 1.08001 * 119.77369 * 0.02562 * 6 5 4 26 26 H 1.07996 * 120.05134 * 180.25924 * 7 6 5 27 27 H 0.96999 * 120.00548 * 354.21286 * 12 11 9 28 28 H 1.08001 * 119.96010 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7422 -1.0296 -0.0002 6 6 4.4180 -0.9043 -1.2051 7 6 5.7595 -0.6499 -1.2230 8 6 6.4655 -0.5234 -0.0124 9 6 7.8545 -0.2648 -0.0218 10 1 8.3177 0.2283 0.8201 11 6 8.6301 -0.6473 -1.1220 12 7 8.2393 -1.6350 -1.8860 13 14 10.2231 0.2519 -1.4997 14 1 10.8522 -0.3413 -2.7071 15 1 9.9347 1.6876 -1.7461 16 1 11.1493 0.1240 -0.3460 17 6 5.7747 -0.6511 1.2101 18 9 6.4365 -0.5270 2.3813 19 6 4.4179 -0.9034 1.2021 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.9972 -1.8770 -0.8891 24 1 1.9972 -1.8762 0.8908 25 1 3.8786 -1.0042 -2.1354 26 1 6.2783 -0.5493 -2.1648 27 1 7.4580 -2.1562 -1.6434 28 1 3.8823 -1.0028 2.1347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306881147.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = -103.652008 kcal Electronic energy + Delta-G solvation = -14480.816400 eV Core-core repulsion = 11795.507974 eV Total energy + Delta-G solvation = -2685.308427 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.33797 -40.60740 -39.23257 -36.16652 -33.13102 -31.22166 -31.14923 -28.97617 -25.96677 -23.23229 -22.57117 -20.42831 -20.01442 -17.64372 -17.25224 -16.67918 -16.59933 -16.10872 -15.98567 -15.77606 -15.51791 -14.77725 -14.53625 -13.89862 -13.73366 -13.17824 -13.08263 -12.93118 -12.56847 -12.51656 -12.43200 -11.98202 -11.85954 -11.42848 -10.99224 -10.55887 -9.62998 -9.53856 -9.20524 -6.55915 0.67663 0.70613 1.17350 1.46506 1.57534 1.77582 2.27201 2.51523 3.20386 3.53264 3.80856 4.02932 4.12498 4.34937 4.49003 4.53428 4.74586 4.80971 4.84732 4.87321 5.08664 5.25748 5.30023 5.50629 5.66946 5.71046 5.88794 5.99433 6.21623 6.62469 6.74800 6.77932 7.92496 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.043360 B = 0.007473 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.596692 B = 3746.058139 C = 4029.762258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.348 3.652 3 O -0.509 6.509 4 C -0.110 4.110 5 C -0.178 4.178 6 C -0.080 4.080 7 C -0.213 4.213 8 C 0.043 3.957 9 C -0.554 4.554 10 H 0.064 0.936 11 C 0.008 3.992 12 N -0.805 5.805 13 Si 1.118 2.882 14 H -0.262 1.262 15 H -0.265 1.265 16 H -0.260 1.260 17 C -0.072 4.072 18 F -0.172 7.172 19 C -0.101 4.101 20 H 0.111 0.889 21 H 0.078 0.922 22 H 0.116 0.884 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.100 0.900 27 H 0.286 0.714 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 -1.426 0.095 11.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.227 3.773 3 O -0.386 6.386 4 C -0.147 4.147 5 C -0.179 4.179 6 C -0.098 4.098 7 C -0.233 4.233 8 C 0.040 3.960 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.209 4.209 12 N -0.428 5.428 13 Si 0.934 3.066 14 H -0.185 1.185 15 H -0.189 1.189 16 H -0.185 1.185 17 C -0.092 4.092 18 F -0.151 7.151 19 C -0.120 4.120 20 H 0.129 0.871 21 H 0.097 0.903 22 H 0.134 0.866 23 H 0.146 0.854 24 H 0.142 0.858 25 H 0.143 0.857 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.962 -0.857 -0.978 10.046 hybrid contribution -0.857 -0.070 1.540 1.764 sum -10.819 -0.927 0.562 10.873 Atomic orbital electron populations 1.22287 0.90764 1.05934 1.05937 1.25466 0.93601 0.89836 0.68443 1.90444 1.73578 1.36932 1.37688 1.21054 0.89341 0.97426 1.06846 1.19090 0.96052 1.11504 0.91251 1.20627 0.93500 0.97921 0.97759 1.20749 0.95048 1.11307 0.96174 1.18030 0.94619 0.92174 0.91222 1.20669 0.93741 1.37248 1.06551 0.91804 1.28483 1.06938 0.94739 0.90723 1.70575 1.23755 1.11940 1.36495 0.83009 0.69944 0.75623 0.78050 1.18549 1.18926 1.18483 1.18163 0.92103 1.18229 0.80694 1.91224 1.82119 1.95060 1.46724 1.20726 0.91371 1.00847 0.99080 0.87075 0.90261 0.86571 0.85433 0.85779 0.85673 0.88209 0.90197 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 10.25 71.24 0.73 -2.21 15 2 C 0.35 9.48 7.26 29.10 0.21 9.69 15 3 O -0.51 -20.25 16.78 -1.47 -0.02 -20.28 15 4 C -0.11 -2.88 5.74 29.10 0.17 -2.71 15 5 C -0.18 -7.18 4.39 -19.69 -0.09 -7.27 15 6 C -0.08 -3.54 9.61 21.99 0.21 -3.33 15 7 C -0.21 -11.24 7.90 22.48 0.18 -11.06 15 8 C 0.04 2.45 5.30 -21.25 -0.11 2.34 15 9 C -0.55 -32.28 8.71 23.43 0.20 -32.07 15 10 H 0.06 3.77 7.81 -2.91 -0.02 3.75 15 11 C 0.01 0.43 4.94 85.25 0.42 0.85 15 12 N -0.81 -43.96 12.32 21.83 0.27 -43.69 15 13 Si 1.12 44.82 30.00 68.60 2.06 46.88 15 14 H -0.26 -9.93 7.11 99.48 0.71 -9.23 15 15 H -0.26 -10.15 7.11 99.48 0.71 -9.45 15 16 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 17 C -0.07 -3.92 7.31 22.89 0.17 -3.76 15 18 F -0.17 -9.47 16.73 44.97 0.75 -8.72 15 19 C -0.10 -4.63 9.66 22.28 0.22 -4.41 15 20 H 0.11 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.08 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.12 1.02 8.12 -2.39 -0.02 1.00 15 23 H 0.13 2.54 8.08 -2.39 -0.02 2.52 15 24 H 0.12 2.52 8.08 -2.39 -0.02 2.50 15 25 H 0.13 4.67 8.06 -2.91 -0.02 4.64 15 26 H 0.10 5.41 6.49 -2.91 -0.02 5.39 15 27 H 0.29 16.09 6.68 -92.71 -0.62 15.47 15 28 H 0.13 4.94 8.06 -2.91 -0.02 4.92 15 Total: -1.00 -71.40 255.89 6.68 -64.73 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.32 Total: 15.02 kcal Atomic # 6 Polarization: -56.25 SS G_CDS: 2.31 Total: -53.94 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.27 Total: -43.69 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.02 Total: -20.28 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.75 Total: -8.72 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.06 Total: 46.88 kcal Total: -71.40 6.68 -64.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306881147.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.925 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds