Wall clock time and date at job start Mon Mar 30 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20760 * 120.00062 * 2 1 4 4 C 1.50704 * 119.99637 * 180.02562 * 2 1 3 5 5 C 1.50697 * 109.46693 * 180.02562 * 4 2 1 6 6 C 1.38631 * 119.76245 * 265.25276 * 5 4 2 7 7 C 1.37604 * 120.27641 * 180.29883 * 6 5 4 8 8 C 1.40748 * 119.79456 * 359.72802 * 7 6 5 9 9 C 1.41402 * 120.23380 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00120 * 150.19552 * 9 8 7 11 11 C 1.39936 * 119.99409 * 330.20250 * 9 8 7 12 12 N 1.30825 * 119.99644 * 161.73254 * 11 9 8 13 13 Si 1.86797 * 120.00340 * 341.72893 * 11 9 8 14 14 H 1.48502 * 109.47193 * 95.41628 * 13 11 9 15 15 H 1.48504 * 109.47316 * 215.41519 * 13 11 9 16 16 H 1.48498 * 109.47409 * 335.41662 * 13 11 9 17 17 C 1.40657 * 119.53752 * 359.97438 * 8 7 6 18 18 C 1.37862 * 119.72247 * 0.02562 * 17 8 7 19 19 F 1.35098 * 119.90319 * 180.02562 * 18 17 8 20 20 H 1.09006 * 109.46870 * 270.00481 * 1 2 3 21 21 H 1.08999 * 109.47009 * 30.00101 * 1 2 3 22 22 H 1.09003 * 109.47280 * 150.00349 * 1 2 3 23 23 H 1.08990 * 109.47403 * 59.99782 * 4 2 1 24 24 H 1.09003 * 109.46953 * 299.99283 * 4 2 1 25 25 H 1.08001 * 119.85955 * 0.02562 * 6 5 4 26 26 H 1.07992 * 120.10427 * 179.70063 * 7 6 5 27 27 H 0.97002 * 120.00078 * 179.97438 * 12 11 9 28 28 H 1.08002 * 120.14331 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 -0.0006 5 6 3.7420 -1.0298 0.0002 6 6 4.4373 -1.0012 -1.1989 7 6 5.7914 -0.7568 -1.2100 8 6 6.4710 -0.5295 0.0014 9 6 7.8623 -0.2769 0.0008 10 1 8.2990 0.3425 0.7701 11 6 8.6731 -0.8295 -0.9969 12 7 9.8623 -0.3332 -1.2228 13 14 8.0577 -2.2760 -2.0060 14 1 7.4630 -1.7786 -3.2726 15 1 9.1925 -3.1828 -2.3146 16 1 7.0283 -3.0165 -1.2332 17 6 5.7564 -0.5542 1.2127 18 6 4.4000 -0.8009 1.2011 19 9 3.7100 -0.8250 2.3623 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 1.9971 -1.8763 -0.8907 24 1 1.9971 -1.8771 0.8892 25 1 3.9147 -1.1757 -2.1277 26 1 6.3311 -0.7399 -2.1452 27 1 10.4245 -0.7164 -1.9141 28 1 6.2679 -0.3807 2.1479 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307006096.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:59 Heat of formation + Delta-G solvation = -96.574880 kcal Electronic energy + Delta-G solvation = -14587.771307 eV Core-core repulsion = 11902.769768 eV Total energy + Delta-G solvation = -2685.001539 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.74213 -40.51722 -39.24113 -35.73948 -33.72817 -31.52721 -31.17913 -29.25621 -25.81350 -23.48005 -22.53800 -20.47302 -19.70858 -17.76996 -17.17270 -16.98561 -16.83097 -16.49830 -16.08710 -15.90698 -15.14313 -14.95607 -14.61661 -14.06142 -13.65092 -13.31017 -13.23215 -12.94015 -12.91270 -12.77909 -12.40237 -12.08085 -11.73398 -11.55293 -11.13642 -10.56868 -9.60997 -9.32045 -8.97318 -6.61723 0.57708 0.62693 1.16989 1.26060 1.40441 1.49801 2.10759 2.42856 3.23394 3.51032 3.58532 3.96342 4.09459 4.38758 4.41069 4.56201 4.73312 4.79006 4.81616 4.86149 4.89304 5.19732 5.25341 5.43127 5.51965 5.68899 5.79641 6.11278 6.27824 6.59127 6.69384 6.76501 8.10788 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.044081 B = 0.008263 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.043210 B = 3387.660907 C = 3637.502596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.347 3.653 3 O -0.507 6.507 4 C -0.113 4.113 5 C -0.225 4.225 6 C -0.045 4.045 7 C -0.254 4.254 8 C 0.096 3.904 9 C -0.483 4.483 10 H 0.055 0.945 11 C 0.048 3.952 12 N -0.841 5.841 13 Si 0.970 3.030 14 H -0.249 1.249 15 H -0.274 1.274 16 H -0.249 1.249 17 C -0.269 4.269 18 C 0.127 3.873 19 F -0.155 7.155 20 H 0.107 0.893 21 H 0.081 0.919 22 H 0.118 0.882 23 H 0.138 0.862 24 H 0.114 0.886 25 H 0.145 0.855 26 H 0.110 0.890 27 H 0.298 0.702 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.580 -6.242 -2.303 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.225 3.775 3 O -0.384 6.384 4 C -0.150 4.150 5 C -0.227 4.227 6 C -0.063 4.063 7 C -0.273 4.273 8 C 0.093 3.907 9 C -0.511 4.511 10 H 0.073 0.927 11 C -0.168 4.168 12 N -0.466 5.466 13 Si 0.792 3.208 14 H -0.174 1.174 15 H -0.200 1.200 16 H -0.173 1.173 17 C -0.289 4.289 18 C 0.108 3.892 19 F -0.134 7.134 20 H 0.125 0.875 21 H 0.100 0.900 22 H 0.136 0.864 23 H 0.156 0.844 24 H 0.132 0.868 25 H 0.163 0.837 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.006 -5.643 -2.348 16.203 hybrid contribution 0.679 0.013 0.290 0.738 sum -14.327 -5.630 -2.058 15.531 Atomic orbital electron populations 1.22283 0.90735 1.06103 1.05786 1.25456 0.93702 0.89839 0.68467 1.90434 1.73536 1.36816 1.37632 1.21018 0.89394 0.97675 1.06898 1.19284 0.96722 1.15459 0.91200 1.20775 0.93109 0.95260 0.97121 1.21220 0.95466 1.13846 0.96729 1.17594 0.93145 0.88660 0.91301 1.19479 0.92097 1.28795 1.10778 0.92683 1.26949 0.94336 0.99620 0.95930 1.69711 1.10649 1.37682 1.28564 0.85426 0.78605 0.77687 0.79109 1.17415 1.20024 1.17266 1.21063 0.93229 1.16231 0.98415 1.17526 0.89522 1.01057 0.81070 1.91339 1.79776 1.94282 1.48036 0.87450 0.90026 0.86391 0.84393 0.86815 0.83697 0.87245 0.89145 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 10.25 71.24 0.73 -2.29 15 2 C 0.35 9.59 7.26 29.10 0.21 9.80 15 3 O -0.51 -20.12 16.77 -1.45 -0.02 -20.14 15 4 C -0.11 -2.99 5.51 29.10 0.16 -2.83 15 5 C -0.22 -8.77 4.40 -19.63 -0.09 -8.86 15 6 C -0.04 -1.78 9.65 22.21 0.21 -1.57 15 7 C -0.25 -11.94 7.18 22.73 0.16 -11.78 15 8 C 0.10 5.07 5.10 -21.30 -0.11 4.96 15 9 C -0.48 -27.72 9.57 23.46 0.22 -27.50 15 10 H 0.05 3.42 8.06 -2.91 -0.02 3.40 15 11 C 0.05 2.54 5.40 85.25 0.46 3.00 15 12 N -0.84 -45.85 13.93 21.82 0.30 -45.55 15 13 Si 0.97 41.40 24.52 68.60 1.68 43.09 15 14 H -0.25 -9.81 6.71 99.48 0.67 -9.14 15 15 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 16 H -0.25 -10.78 6.86 99.48 0.68 -10.10 15 17 C -0.27 -13.63 9.77 22.77 0.22 -13.41 15 18 C 0.13 5.73 7.23 22.32 0.16 5.89 15 19 F -0.16 -6.50 16.54 44.97 0.74 -5.76 15 20 H 0.11 1.41 8.14 -2.38 -0.02 1.39 15 21 H 0.08 1.31 8.14 -2.39 -0.02 1.29 15 22 H 0.12 1.03 8.12 -2.39 -0.02 1.01 15 23 H 0.14 2.52 8.05 -2.39 -0.02 2.51 15 24 H 0.11 2.61 7.77 -2.39 -0.02 2.60 15 25 H 0.15 4.49 8.06 -2.91 -0.02 4.47 15 26 H 0.11 5.00 4.73 -2.91 -0.01 4.99 15 27 H 0.30 14.40 8.30 -92.71 -0.77 13.63 15 28 H 0.10 5.21 8.06 -2.91 -0.02 5.19 15 Total: -1.00 -68.07 251.19 6.17 -61.90 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 1.11 Total: 11.03 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 2.35 Total: -44.57 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.30 Total: -45.55 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.02 Total: -20.14 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.74 Total: -5.76 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.68 Total: 43.09 kcal Total: -68.07 6.17 -61.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307006096.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.672 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds