Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46864 * 2 1 4 4 O 1.21345 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.46553 * 120.00013 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.57691 * 354.30017 * 5 3 2 7 7 C 1.38087 * 120.08939 * 180.30007 * 6 5 3 8 8 C 1.38568 * 121.36341 * 359.71170 * 7 6 5 9 9 C 1.37868 * 121.19859 * 359.97438 * 8 7 6 10 10 F 1.35104 * 120.11239 * 179.97438 * 9 8 7 11 11 C 1.41140 * 119.78748 * 0.02562 * 9 8 7 12 12 C 1.40550 * 120.64423 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99441 * 144.81240 * 12 11 9 14 14 C 1.40418 * 119.99907 * 324.81846 * 12 11 9 15 15 N 1.30560 * 120.00007 * 336.83268 * 14 12 11 16 16 Si 1.86807 * 119.99826 * 156.56581 * 14 12 11 17 17 H 1.48502 * 109.46945 * 180.27040 * 16 14 12 18 18 H 1.48493 * 109.47047 * 300.27043 * 16 14 12 19 19 H 1.48502 * 109.47147 * 60.27359 * 16 14 12 20 20 H 1.09005 * 109.47078 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47305 * 299.99908 * 1 2 3 22 22 H 1.08998 * 109.47483 * 60.00540 * 1 2 3 23 23 H 1.08997 * 109.46991 * 239.99789 * 2 1 3 24 24 H 1.08996 * 109.46971 * 119.99548 * 2 1 3 25 25 H 1.07993 * 119.95165 * 0.02562 * 6 5 3 26 26 H 1.08003 * 119.32028 * 179.68446 * 7 6 5 27 27 H 1.08008 * 119.40334 * 180.02562 * 8 7 6 28 28 H 0.96994 * 120.00212 * 353.36363 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2437 2.3431 0.0005 5 6 3.4731 1.6887 -0.0006 6 6 4.3903 0.6423 0.1183 7 6 5.7456 0.9068 0.1228 8 6 6.2284 2.2003 0.0051 9 6 5.3721 3.2734 -0.1217 10 9 5.8668 4.5255 -0.2344 11 6 3.9770 3.0598 -0.1322 12 6 3.0877 4.1406 -0.2599 13 1 2.1666 4.0197 -0.8107 14 6 3.3970 5.3776 0.3284 15 7 4.2258 5.4323 1.3357 16 14 2.6284 6.9456 -0.3351 17 1 3.1184 8.1074 0.4493 18 1 3.0053 7.1167 -1.7612 19 1 1.1503 6.8592 -0.2207 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 4.0390 -0.3747 0.2113 26 1 6.4438 0.0886 0.2206 27 1 7.2949 2.3709 0.0120 28 1 4.5531 4.6134 1.7395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307025809.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -78.392254 kcal Electronic energy + Delta-G solvation = -14957.977506 eV Core-core repulsion = 12273.764424 eV Total energy + Delta-G solvation = -2684.213082 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.35601 -38.58606 -36.50707 -34.14644 -32.23118 -29.95173 -29.31275 -25.68388 -24.13613 -21.84756 -21.02050 -18.58939 -18.13457 -16.14377 -15.25533 -14.95745 -14.71173 -14.31125 -14.08156 -14.06481 -13.58037 -12.94271 -12.50372 -12.13886 -11.75456 -11.59507 -11.39253 -11.21240 -10.73220 -10.70485 -10.67882 -10.55832 -10.41714 -9.82992 -9.08437 -8.38506 -7.81429 -7.60111 -7.32339 -4.66707 1.85901 2.59386 3.13401 3.23116 3.34425 3.56537 3.93828 4.44276 4.98119 5.13246 5.53068 5.57610 5.70794 5.81773 5.85107 6.09000 6.13927 6.30262 6.35018 6.54087 6.69172 6.77347 7.16046 7.22834 7.50392 7.57078 7.58110 7.85173 7.98352 8.50865 8.55302 8.87265 9.81007 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.013273 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.343604 B = 2109.029723 C = 3161.996566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.166 4.166 3 C 0.387 3.613 4 O -0.473 6.473 5 C -0.286 4.286 6 C -0.034 4.034 7 C -0.252 4.252 8 C -0.096 4.096 9 C -0.014 4.014 10 F -0.147 7.147 11 C 0.083 3.917 12 C -0.438 4.438 13 H 0.107 0.893 14 C 0.028 3.972 15 N -0.751 5.751 16 Si 1.072 2.928 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.271 1.271 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -5.547 -1.602 5.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.204 4.204 3 C 0.270 3.730 4 O -0.353 6.353 5 C -0.289 4.289 6 C -0.053 4.053 7 C -0.271 4.271 8 C -0.116 4.116 9 C -0.034 4.034 10 F -0.126 7.126 11 C 0.078 3.922 12 C -0.463 4.463 13 H 0.125 0.875 14 C -0.197 4.197 15 N -0.371 5.371 16 Si 0.894 3.106 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.196 1.196 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.898 -3.383 -1.374 4.116 hybrid contribution 0.504 -1.799 -0.096 1.871 sum -1.394 -5.182 -1.470 5.564 Atomic orbital electron populations 1.21536 0.94827 1.00397 1.02765 1.21928 0.97121 0.98198 1.03151 1.21742 0.88502 0.89423 0.73321 1.90445 1.58520 1.47055 1.39258 1.20735 0.93150 0.93041 1.21964 1.20913 0.92990 0.96634 0.94714 1.19939 0.94773 0.94897 1.17480 1.20628 0.97790 0.92716 1.00479 1.17913 0.92139 0.78979 1.14402 1.91392 1.87899 1.39104 1.94203 1.18601 0.89871 0.92575 0.91190 1.21092 1.06153 0.94291 1.24736 0.87529 1.27434 0.94002 1.04019 0.94286 1.70288 1.17001 1.35609 1.14177 0.83525 0.76668 0.73337 0.77043 1.19523 1.19654 1.19567 0.93198 0.92476 0.92488 0.89775 0.89855 0.87921 0.88173 0.87939 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.20 37.16 0.34 -1.74 15 2 C -0.17 -2.73 5.12 -27.88 -0.14 -2.87 15 3 C 0.39 8.58 7.07 -30.96 -0.22 8.36 15 4 O -0.47 -11.91 13.48 5.50 0.07 -11.84 15 5 C -0.29 -6.81 6.06 -102.62 -0.62 -7.43 15 6 C -0.03 -0.70 9.47 -39.11 -0.37 -1.07 15 7 C -0.25 -5.17 9.98 -39.52 -0.39 -5.57 15 8 C -0.10 -2.17 9.95 -39.60 -0.39 -2.56 15 9 C -0.01 -0.37 6.12 -38.62 -0.24 -0.61 15 10 F -0.15 -3.93 14.25 2.25 0.03 -3.90 15 11 C 0.08 2.20 5.24 -104.53 -0.55 1.65 15 12 C -0.44 -11.93 7.61 -37.89 -0.29 -12.22 15 13 H 0.11 2.96 6.24 -52.49 -0.33 2.63 15 14 C 0.03 0.74 4.43 -17.27 -0.08 0.66 15 15 N -0.75 -20.32 11.87 55.57 0.66 -19.66 15 16 Si 1.07 22.40 30.00 -169.99 -5.10 17.30 15 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 18 H -0.27 -5.45 7.11 56.52 0.40 -5.04 15 19 H -0.27 -5.42 7.11 56.52 0.40 -5.01 15 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.06 0.91 8.10 -51.92 -0.42 0.49 15 22 H 0.06 0.90 8.10 -51.93 -0.42 0.48 15 23 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.08 1.23 7.93 -51.93 -0.41 0.81 15 25 H 0.10 1.73 7.02 -52.49 -0.37 1.36 15 26 H 0.10 1.75 8.06 -52.48 -0.42 1.33 15 27 H 0.10 2.05 8.06 -52.48 -0.42 1.63 15 28 H 0.30 8.29 6.93 -40.82 -0.28 8.01 15 LS Contribution 247.87 15.07 3.74 3.74 Total: -1.00 -28.94 247.87 -6.26 -35.20 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -2.72 Total: 2.55 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.95 Total: -23.39 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.66 Total: -19.66 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.03 Total: -3.90 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.10 Total: 17.30 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.94 -6.26 -35.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307025809.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.187 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds