Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46864 * 2 1 4 4 O 1.21345 * 120.00004 * 0.02562 * 3 2 1 5 5 C 1.46553 * 120.00013 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.57691 * 354.30017 * 5 3 2 7 7 C 1.38087 * 120.08939 * 180.30007 * 6 5 3 8 8 C 1.38568 * 121.36341 * 359.71170 * 7 6 5 9 9 C 1.37868 * 121.19859 * 359.97438 * 8 7 6 10 10 F 1.35104 * 120.11239 * 179.97438 * 9 8 7 11 11 C 1.41140 * 119.78748 * 0.02562 * 9 8 7 12 12 C 1.40550 * 120.64423 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99441 * 144.81240 * 12 11 9 14 14 C 1.40418 * 119.99907 * 324.81846 * 12 11 9 15 15 N 1.30560 * 120.00007 * 336.83268 * 14 12 11 16 16 Si 1.86807 * 119.99826 * 156.56581 * 14 12 11 17 17 H 1.48502 * 109.46945 * 180.27040 * 16 14 12 18 18 H 1.48493 * 109.47047 * 300.27043 * 16 14 12 19 19 H 1.48502 * 109.47147 * 60.27359 * 16 14 12 20 20 H 1.09005 * 109.47078 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47305 * 299.99908 * 1 2 3 22 22 H 1.08998 * 109.47483 * 60.00540 * 1 2 3 23 23 H 1.08997 * 109.46991 * 239.99789 * 2 1 3 24 24 H 1.08996 * 109.46971 * 119.99548 * 2 1 3 25 25 H 1.07993 * 119.95165 * 0.02562 * 6 5 3 26 26 H 1.08003 * 119.32028 * 179.68446 * 7 6 5 27 27 H 1.08008 * 119.40334 * 180.02562 * 8 7 6 28 28 H 0.96994 * 120.00212 * 353.36363 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2437 2.3431 0.0005 5 6 3.4731 1.6887 -0.0006 6 6 4.3903 0.6423 0.1183 7 6 5.7456 0.9068 0.1228 8 6 6.2284 2.2003 0.0051 9 6 5.3721 3.2734 -0.1217 10 9 5.8668 4.5255 -0.2344 11 6 3.9770 3.0598 -0.1322 12 6 3.0877 4.1406 -0.2599 13 1 2.1666 4.0197 -0.8107 14 6 3.3970 5.3776 0.3284 15 7 4.2258 5.4323 1.3357 16 14 2.6284 6.9456 -0.3351 17 1 3.1184 8.1074 0.4493 18 1 3.0053 7.1167 -1.7612 19 1 1.1503 6.8592 -0.2207 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 4.0390 -0.3747 0.2113 26 1 6.4438 0.0886 0.2206 27 1 7.2949 2.3709 0.0120 28 1 4.5531 4.6134 1.7395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307025809.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -94.812497 kcal Electronic energy + Delta-G solvation = -14958.689541 eV Core-core repulsion = 12273.764424 eV Total energy + Delta-G solvation = -2684.925117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.30419 -40.35682 -38.31036 -35.99351 -33.66913 -31.75399 -31.07938 -27.47412 -25.76342 -23.48171 -22.81424 -20.27885 -20.01259 -17.89205 -17.12029 -16.73510 -16.28727 -16.00470 -15.91464 -15.75951 -15.32853 -14.76371 -14.22938 -13.81879 -13.48080 -13.05653 -12.96560 -12.71664 -12.47924 -12.38551 -12.27223 -12.04924 -11.94554 -11.62167 -10.94744 -10.14511 -9.70324 -9.43567 -9.23917 -6.62963 0.05758 0.77090 1.40694 1.55689 1.71154 1.82253 2.22572 2.59661 3.29129 3.41544 3.96249 4.19285 4.21242 4.33626 4.35971 4.64150 4.66546 4.93478 4.98150 5.07813 5.11957 5.31121 5.36112 5.44674 5.59886 5.74240 5.80702 5.93573 6.16135 6.58180 6.67243 7.14959 7.83585 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.023497 B = 0.013273 C = 0.008853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.343604 B = 2109.029723 C = 3161.996566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.378 3.622 4 O -0.511 6.511 5 C -0.303 4.303 6 C -0.026 4.026 7 C -0.234 4.234 8 C -0.093 4.093 9 C -0.060 4.060 10 F -0.163 7.163 11 C 0.058 3.942 12 C -0.490 4.490 13 H 0.086 0.914 14 C -0.004 4.004 15 N -0.780 5.780 16 Si 1.114 2.886 17 H -0.262 1.262 18 H -0.261 1.261 19 H -0.260 1.260 20 H 0.089 0.911 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.127 0.873 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -8.740 -1.828 9.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.192 4.192 3 C 0.263 3.737 4 O -0.393 6.393 5 C -0.306 4.306 6 C -0.044 4.044 7 C -0.253 4.253 8 C -0.112 4.112 9 C -0.080 4.080 10 F -0.143 7.143 11 C 0.054 3.946 12 C -0.516 4.516 13 H 0.104 0.896 14 C -0.223 4.223 15 N -0.401 5.401 16 Si 0.930 3.070 17 H -0.186 1.186 18 H -0.186 1.186 19 H -0.185 1.185 20 H 0.108 0.892 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.173 0.827 26 H 0.165 0.835 27 H 0.145 0.855 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.569 -6.605 -1.603 6.975 hybrid contribution 0.474 -1.164 -0.036 1.257 sum -1.095 -7.768 -1.639 8.014 Atomic orbital electron populations 1.21549 0.94020 1.02482 1.01339 1.21934 0.97819 0.93739 1.05733 1.22641 0.87709 0.91968 0.71394 1.90440 1.59198 1.49224 1.40463 1.21395 0.95295 0.92912 1.20981 1.21448 0.92498 0.98096 0.92334 1.20587 0.95809 0.95105 1.13784 1.21078 0.98811 0.92773 0.98562 1.18308 0.92633 0.79431 1.17608 1.91330 1.87969 1.40339 1.94614 1.19115 0.90622 0.94137 0.90770 1.20991 1.06422 0.96025 1.28124 0.89565 1.28639 0.93583 1.06599 0.93469 1.70410 1.19883 1.34155 1.15664 0.83065 0.76505 0.70387 0.77068 1.18640 1.18558 1.18461 0.89211 0.94089 0.93944 0.86875 0.86940 0.82736 0.83472 0.85538 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.20 71.98 0.66 -3.06 15 2 C -0.16 -4.45 5.12 29.85 0.15 -4.30 15 3 C 0.38 16.36 7.07 27.86 0.20 16.56 15 4 O -0.51 -26.43 13.48 -3.23 -0.04 -26.48 15 5 C -0.30 -14.08 6.06 -18.57 -0.11 -14.19 15 6 C -0.03 -0.94 9.47 22.58 0.21 -0.73 15 7 C -0.23 -8.51 9.98 22.31 0.22 -8.29 15 8 C -0.09 -3.99 9.95 22.26 0.22 -3.77 15 9 C -0.06 -3.15 6.12 22.89 0.14 -3.01 15 10 F -0.16 -9.13 14.25 44.97 0.64 -8.49 15 11 C 0.06 3.18 5.24 -19.80 -0.10 3.07 15 12 C -0.49 -28.24 7.61 23.37 0.18 -28.06 15 13 H 0.09 5.14 6.24 -2.91 -0.02 5.12 15 14 C 0.00 -0.22 4.43 85.41 0.38 0.16 15 15 N -0.78 -44.66 11.87 21.91 0.26 -44.40 15 16 Si 1.11 47.27 30.00 68.60 2.06 49.33 15 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 15 18 H -0.26 -10.47 7.11 99.48 0.71 -9.77 15 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 20 H 0.09 1.74 8.14 -2.38 -0.02 1.72 15 21 H 0.04 1.23 8.10 -2.38 -0.02 1.21 15 22 H 0.04 1.26 8.10 -2.39 -0.02 1.24 15 23 H 0.11 2.67 8.14 -2.39 -0.02 2.66 15 24 H 0.11 2.65 7.93 -2.39 -0.02 2.63 15 25 H 0.16 4.07 7.02 -2.91 -0.02 4.05 15 26 H 0.15 4.07 8.06 -2.91 -0.02 4.05 15 27 H 0.13 4.73 8.06 -2.91 -0.02 4.71 15 28 H 0.28 16.55 6.93 -92.71 -0.64 15.91 15 Total: -1.00 -68.08 247.87 6.36 -61.72 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.30 Total: 13.93 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 2.15 Total: -45.61 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.26 Total: -44.40 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.04 Total: -26.48 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.64 Total: -8.49 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.06 Total: 49.33 kcal Total: -68.08 6.36 -61.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307025809.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.097 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds