Wall clock time and date at job start Mon Mar 30 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 119.99973 * 2 1 4 4 C 1.50705 * 120.00284 * 179.97438 * 2 1 3 5 5 C 1.50699 * 109.47039 * 180.02562 * 4 2 1 6 6 C 1.38620 * 119.86495 * 90.00187 * 5 4 2 7 7 C 1.38835 * 120.47760 * 180.02562 * 6 5 4 8 8 F 1.35097 * 119.90222 * 180.02562 * 7 6 5 9 9 C 1.37870 * 120.19585 * 359.97262 * 7 6 5 10 10 C 1.40653 * 119.71824 * 0.02904 * 9 7 6 11 11 C 1.41404 * 120.22924 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99830 * 204.35055 * 11 10 9 13 13 C 1.39936 * 119.99645 * 24.34647 * 11 10 9 14 14 N 1.30822 * 120.00418 * 17.82400 * 13 11 10 15 15 Si 1.86805 * 119.99849 * 197.81793 * 13 11 10 16 16 H 1.48504 * 109.46982 * 60.00191 * 15 13 11 17 17 H 1.48496 * 109.47106 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47080 * 300.00711 * 15 13 11 19 19 C 1.37607 * 119.86058 * 270.02078 * 5 4 2 20 20 H 1.09002 * 109.47448 * 239.99959 * 1 2 3 21 21 H 1.08998 * 109.47424 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47376 * 120.00169 * 1 2 3 23 23 H 1.08995 * 109.46619 * 60.00224 * 4 2 1 24 24 H 1.08994 * 109.46851 * 300.00174 * 4 2 1 25 25 H 1.08005 * 119.75790 * 0.03996 * 6 5 4 26 26 H 1.08000 * 120.13681 * 179.74652 * 9 7 6 27 27 H 0.97002 * 120.00037 * 179.97438 * 14 13 11 28 28 H 1.07994 * 120.10424 * 359.95673 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7421 -1.0296 0.0011 6 6 4.4203 -0.9032 1.2034 7 6 5.7851 -0.6489 1.2188 8 9 6.4345 -0.5284 2.3973 9 6 6.4798 -0.5201 0.0349 10 6 5.7999 -0.6468 -1.1899 11 6 6.5018 -0.5172 -2.4105 12 1 5.9763 -0.2229 -3.3070 13 6 7.8773 -0.7703 -2.4569 14 7 8.4504 -1.4485 -1.4961 15 14 8.8952 -0.1398 -3.8908 16 1 8.8005 1.3410 -3.9517 17 1 10.3134 -0.5384 -3.7041 18 1 8.3804 -0.7211 -5.1566 19 6 4.4161 -0.9042 -1.1921 20 1 -0.3634 -0.5138 0.8900 21 1 -0.3634 1.0276 0.0005 22 1 -0.3634 -0.5138 -0.8899 23 1 1.9972 -1.8770 -0.8892 24 1 1.9972 -1.8762 0.8908 25 1 3.8831 -1.0035 2.1350 26 1 7.5407 -0.3183 0.0479 27 1 9.4039 -1.6242 -1.5285 28 1 3.8851 -1.0036 -2.1272 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027021.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:02 Heat of formation + Delta-G solvation = -98.574021 kcal Electronic energy + Delta-G solvation = -14408.930096 eV Core-core repulsion = 11723.841867 eV Total energy + Delta-G solvation = -2685.088229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.60647 -40.57106 -39.01676 -35.81901 -33.27321 -31.56572 -30.97554 -27.71745 -27.35720 -22.80932 -22.61138 -20.53910 -19.08294 -17.70950 -17.02959 -16.71098 -16.58900 -16.47167 -16.21016 -15.86956 -15.69763 -14.70691 -14.11033 -13.81479 -13.40625 -13.14690 -13.13753 -12.87552 -12.77171 -12.54736 -12.34225 -12.11049 -11.91767 -11.53505 -11.08353 -10.55077 -9.44746 -9.20097 -8.71689 -6.48089 0.77955 0.86118 1.18331 1.36152 1.47626 1.51073 2.16633 2.57489 3.32441 3.63506 3.69785 4.04759 4.37481 4.40167 4.56088 4.73955 4.78317 4.81510 4.85176 4.95805 5.09664 5.26840 5.31031 5.64003 5.71390 5.86961 5.96685 6.23642 6.54843 6.76690 6.81546 6.86601 8.24275 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.008323 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.577222 B = 3363.309460 C = 4024.970431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.352 3.648 3 O -0.506 6.506 4 C -0.127 4.127 5 C -0.026 4.026 6 C -0.270 4.270 7 C 0.089 3.911 8 F -0.168 7.168 9 C -0.234 4.234 10 C 0.101 3.899 11 C -0.491 4.491 12 H 0.086 0.914 13 C 0.034 3.966 14 N -0.821 5.821 15 Si 0.987 3.013 16 H -0.262 1.262 17 H -0.267 1.267 18 H -0.252 1.252 19 C -0.233 4.233 20 H 0.119 0.881 21 H 0.073 0.927 22 H 0.118 0.882 23 H 0.129 0.871 24 H 0.131 0.869 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.291 0.709 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -1.637 -0.339 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.230 3.770 3 O -0.383 6.383 4 C -0.164 4.164 5 C -0.026 4.026 6 C -0.290 4.290 7 C 0.070 3.930 8 F -0.147 7.147 9 C -0.254 4.254 10 C 0.098 3.902 11 C -0.520 4.520 12 H 0.104 0.896 13 C -0.182 4.182 14 N -0.446 5.446 15 Si 0.807 3.193 16 H -0.187 1.187 17 H -0.191 1.191 18 H -0.175 1.175 19 C -0.253 4.253 20 H 0.137 0.863 21 H 0.092 0.908 22 H 0.136 0.864 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.140 0.860 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.337 -1.204 -0.212 10.409 hybrid contribution 1.145 0.213 -0.081 1.168 sum -9.192 -0.991 -0.293 9.250 Atomic orbital electron populations 1.22300 0.90259 1.05251 1.06910 1.25288 0.93735 0.89324 0.68642 1.90456 1.73597 1.36752 1.37494 1.21281 0.89607 0.98244 1.07276 1.19237 0.95392 0.96302 0.91666 1.20424 0.91807 1.18122 0.98661 1.17933 0.91700 1.03446 0.79960 1.91309 1.82410 1.94194 1.46787 1.21198 1.00316 1.12515 0.91412 1.17725 0.92342 0.87421 0.92681 1.19868 0.94087 1.42205 0.95837 0.89587 1.26900 0.99164 0.91843 1.00321 1.69878 1.13604 1.27445 1.33645 0.85177 0.76771 0.79594 0.77759 1.18665 1.19139 1.17547 1.21125 0.94709 1.12499 0.96927 0.86263 0.90751 0.86382 0.85292 0.85127 0.85966 0.87537 0.89831 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 10.26 71.23 0.73 -2.31 15 2 C 0.35 10.04 7.26 29.10 0.21 10.25 15 3 O -0.51 -20.74 16.76 -1.46 -0.02 -20.76 15 4 C -0.13 -3.59 5.76 29.10 0.17 -3.42 15 5 C -0.03 -1.10 4.37 -19.92 -0.09 -1.19 15 6 C -0.27 -12.57 9.68 22.50 0.22 -12.36 15 7 C 0.09 4.70 7.29 22.33 0.16 4.86 15 8 F -0.17 -8.55 17.26 44.97 0.78 -7.78 15 9 C -0.23 -13.44 8.67 22.77 0.20 -13.25 15 10 C 0.10 5.66 5.58 -21.30 -0.12 5.54 15 11 C -0.49 -26.83 9.05 23.46 0.21 -26.61 15 12 H 0.09 4.43 7.91 -2.91 -0.02 4.41 15 13 C 0.03 1.72 5.14 85.25 0.44 2.16 15 14 N -0.82 -44.11 10.95 21.82 0.24 -43.87 15 15 Si 0.99 38.39 29.60 68.60 2.03 40.42 15 16 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 17 H -0.27 -9.83 7.11 99.48 0.71 -9.12 15 18 H -0.25 -9.22 7.11 99.48 0.71 -8.51 15 19 C -0.23 -11.43 9.43 22.73 0.21 -11.22 15 20 H 0.12 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.07 1.28 8.12 -2.39 -0.02 1.26 15 22 H 0.12 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.13 2.90 8.08 -2.39 -0.02 2.89 15 24 H 0.13 2.81 8.08 -2.39 -0.02 2.79 15 25 H 0.12 4.94 8.06 -2.91 -0.02 4.92 15 26 H 0.11 6.43 6.16 -2.91 -0.02 6.41 15 27 H 0.29 14.12 8.30 -92.71 -0.77 13.35 15 28 H 0.11 4.93 8.06 -2.91 -0.02 4.90 15 Total: -1.00 -69.73 257.41 6.53 -63.19 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.17 Total: 16.33 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 2.35 Total: -47.54 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.24 Total: -43.87 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.02 Total: -20.76 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 0.78 Total: -7.78 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -69.73 6.53 -63.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027021.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.382 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds