Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.46852 * 2 1 4 4 O 1.21309 * 120.00574 * 0.02562 * 3 2 1 5 5 C 1.46869 * 119.99526 * 179.97438 * 3 2 1 6 6 C 1.40404 * 119.90450 * 359.97438 * 5 3 2 7 7 C 1.36106 * 120.15343 * 179.73261 * 6 5 3 8 8 C 1.41012 * 119.95101 * 0.56159 * 7 6 5 9 9 C 1.40847 * 120.09786 * 179.71207 * 8 7 6 10 10 H 1.08011 * 120.00223 * 208.67677 * 9 8 7 11 11 C 1.40347 * 120.00400 * 28.67276 * 9 8 7 12 12 N 1.30593 * 120.00398 * 197.88385 * 11 9 8 13 13 Si 1.86804 * 119.99486 * 17.87995 * 11 9 8 14 14 H 1.48497 * 109.47495 * 269.99941 * 13 11 9 15 15 H 1.48502 * 109.47056 * 30.00588 * 13 11 9 16 16 H 1.48503 * 109.46654 * 150.00055 * 13 11 9 17 17 C 1.41206 * 119.80340 * 359.44327 * 8 7 6 18 18 F 1.35105 * 120.07366 * 180.30068 * 17 8 7 19 19 C 1.36567 * 119.85093 * 0.26829 * 17 8 7 20 20 H 1.09002 * 109.47643 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47227 * 299.99801 * 1 2 3 22 22 H 1.09000 * 109.47156 * 59.99507 * 1 2 3 23 23 H 1.09001 * 109.46384 * 240.00289 * 2 1 3 24 24 H 1.08995 * 109.46740 * 120.00292 * 2 1 3 25 25 H 1.07999 * 119.92545 * 0.02562 * 6 5 3 26 26 H 1.08002 * 120.02840 * 180.27036 * 7 6 5 27 27 H 0.96998 * 119.99849 * 355.45345 * 12 11 9 28 28 H 1.08001 * 119.97646 * 179.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3429 0.0005 5 6 3.4762 1.6891 0.0006 6 6 4.3868 0.6204 0.0017 7 6 5.7260 0.8632 -0.0033 8 6 6.2008 2.1910 0.0024 9 6 7.5860 2.4458 0.0034 10 1 7.9687 3.3487 0.4562 11 6 8.4691 1.5266 -0.5838 12 7 9.7415 1.5655 -0.2921 13 14 7.8244 0.2472 -1.7826 14 1 7.4373 -0.9781 -1.0382 15 1 6.6393 0.7890 -2.4948 16 1 8.8843 -0.0863 -2.7678 17 6 5.2833 3.2644 0.0014 18 9 5.7322 4.5387 0.0007 19 6 3.9413 3.0115 0.0004 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.0237 -0.3968 0.0017 26 1 6.4246 0.0396 -0.0069 27 1 10.0869 2.2699 0.2783 28 1 3.2378 3.8310 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307120384.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = -88.975630 kcal Electronic energy + Delta-G solvation = -14505.871856 eV Core-core repulsion = 11821.199845 eV Total energy + Delta-G solvation = -2684.672011 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.53061 -39.02795 -37.21630 -34.16665 -32.53152 -30.79221 -29.62752 -26.43461 -23.83125 -21.78170 -21.26404 -19.12956 -18.46269 -16.68423 -15.48710 -14.97660 -14.97047 -14.61272 -14.40549 -14.13381 -13.83888 -13.23919 -12.85293 -12.69342 -12.11864 -11.87428 -11.54041 -11.31445 -11.17988 -10.95823 -10.89964 -10.40839 -10.20437 -9.80127 -9.40082 -8.88722 -8.13647 -7.92593 -7.64600 -4.95498 1.63485 2.41114 2.90841 3.06400 3.26524 3.36383 3.71875 4.26302 4.71599 4.98599 5.31508 5.38373 5.56304 5.62652 5.77391 5.96284 5.99194 6.15590 6.24313 6.34329 6.36608 6.59150 6.98464 7.08391 7.11622 7.30688 7.36619 7.53818 7.94515 8.09743 8.28952 8.39421 9.53237 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.009039 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.007565 B = 3097.102726 C = 3740.108464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.169 4.169 3 C 0.402 3.598 4 O -0.500 6.500 5 C -0.301 4.301 6 C -0.026 4.026 7 C -0.246 4.246 8 C 0.086 3.914 9 C -0.468 4.468 10 H 0.088 0.912 11 C 0.040 3.960 12 N -0.778 5.778 13 Si 1.075 2.925 14 H -0.269 1.269 15 H -0.257 1.257 16 H -0.283 1.283 17 C -0.032 4.032 18 F -0.158 7.158 19 C -0.046 4.046 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.294 0.706 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.598 -5.491 -0.895 8.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.206 4.206 3 C 0.286 3.714 4 O -0.382 6.382 5 C -0.303 4.303 6 C -0.045 4.045 7 C -0.265 4.265 8 C 0.081 3.919 9 C -0.494 4.494 10 H 0.106 0.894 11 C -0.184 4.184 12 N -0.397 5.397 13 Si 0.899 3.101 14 H -0.195 1.195 15 H -0.181 1.181 16 H -0.210 1.210 17 C -0.051 4.051 18 F -0.137 7.137 19 C -0.065 4.065 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.106 0.894 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.388 -6.214 -1.754 9.083 hybrid contribution -0.012 1.607 1.171 1.989 sum -6.400 -4.606 -0.583 7.907 Atomic orbital electron populations 1.21555 0.94628 1.00811 1.02707 1.21933 0.97278 0.97478 1.03940 1.22063 0.88397 0.89969 0.70958 1.90419 1.58827 1.47799 1.41154 1.19278 0.93330 0.92979 1.24751 1.20634 0.92939 0.96967 0.93915 1.20667 0.95230 0.95603 1.15029 1.17891 0.93438 0.90969 0.89568 1.20996 0.91687 1.07195 1.29536 0.89383 1.27701 0.93564 0.99627 0.97540 1.70437 1.15372 1.28098 1.25827 0.83566 0.76216 0.74893 0.75415 1.19546 1.18137 1.21029 1.17370 0.91826 0.78628 1.17323 1.91319 1.90243 1.36876 1.95300 1.20544 0.93321 0.96691 0.95968 0.92819 0.92489 0.92474 0.89088 0.89099 0.87255 0.86475 0.89383 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.20 37.16 0.34 -1.45 15 2 C -0.17 -2.37 5.01 -27.88 -0.14 -2.51 15 3 C 0.40 7.58 7.11 -30.82 -0.22 7.36 15 4 O -0.50 -10.71 15.95 5.53 0.09 -10.63 15 5 C -0.30 -6.28 5.88 -104.86 -0.62 -6.89 15 6 C -0.03 -0.51 9.39 -39.53 -0.37 -0.88 15 7 C -0.25 -5.41 7.20 -39.30 -0.28 -5.69 15 8 C 0.09 2.11 5.15 -106.73 -0.55 1.56 15 9 C -0.47 -11.89 9.12 -37.80 -0.34 -12.23 15 10 H 0.09 2.34 7.95 -52.48 -0.42 1.93 15 11 C 0.04 0.95 5.42 -17.29 -0.09 0.86 15 12 N -0.78 -18.99 13.64 55.57 0.76 -18.23 15 13 Si 1.08 21.83 24.90 -169.99 -4.23 17.60 15 14 H -0.27 -5.01 6.43 56.52 0.36 -4.64 15 15 H -0.26 -5.25 7.04 56.52 0.40 -4.85 15 16 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 17 C -0.03 -0.77 7.26 -39.06 -0.28 -1.06 15 18 F -0.16 -3.92 16.74 2.25 0.04 -3.88 15 19 C -0.05 -1.04 9.50 -39.46 -0.37 -1.42 15 20 H 0.05 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.06 0.77 8.10 -51.93 -0.42 0.34 15 22 H 0.06 0.77 8.10 -51.93 -0.42 0.35 15 23 H 0.09 1.13 8.08 -51.93 -0.42 0.71 15 24 H 0.09 1.13 8.07 -51.93 -0.42 0.71 15 25 H 0.11 1.71 7.00 -52.49 -0.37 1.35 15 26 H 0.12 2.44 4.38 -52.49 -0.23 2.21 15 27 H 0.29 6.97 8.72 -40.82 -0.36 6.61 15 28 H 0.12 2.55 7.62 -52.49 -0.40 2.15 15 LS Contribution 248.20 15.07 3.74 3.74 Total: -1.00 -26.68 248.20 -5.25 -31.94 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -2.71 Total: 1.81 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.93 Total: -22.35 kcal Atomic # 7 Polarization: -18.99 SS G_CDS: 0.76 Total: -18.23 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.23 Total: 17.60 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.68 -5.25 -31.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307120384.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.038 kcal (2) G-P(sol) polarization free energy of solvation -26.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds