Wall clock time and date at job start Mon Mar 30 2020 02:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.47022 * 2 1 4 4 C 1.38110 * 119.95834 * 269.99886 * 3 2 1 5 5 C 1.38951 * 119.91726 * 179.97438 * 4 3 2 6 6 S 1.76202 * 120.07906 * 180.02562 * 5 4 3 7 7 C 1.38992 * 119.84228 * 0.02562 * 5 4 3 8 8 C 1.38060 * 119.92003 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.96503 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47169 * 270.02743 * 9 8 7 11 11 H 1.08008 * 119.99687 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00415 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99523 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00398 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47148 * 59.99675 * 14 12 10 16 16 H 1.48495 * 109.47481 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47287 * 299.99962 * 14 12 10 18 18 C 1.38281 * 119.96230 * 89.99982 * 3 2 1 19 19 H 1.08995 * 109.47078 * 60.00193 * 1 2 3 20 20 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47106 * 300.00061 * 1 2 3 22 22 H 1.09000 * 109.47106 * 239.99939 * 2 1 3 23 23 H 1.09003 * 109.46927 * 119.99538 * 2 1 3 24 24 H 1.08003 * 120.03694 * 0.02562 * 4 3 2 25 25 H 1.34492 * 102.99956 * 269.97740 * 6 5 4 26 26 H 1.08000 * 120.04114 * 180.02562 * 7 5 4 27 27 H 1.09001 * 109.46816 * 30.02305 * 9 8 7 28 28 H 1.08998 * 109.47649 * 150.02014 * 9 8 7 29 29 H 0.97000 * 119.99905 * 180.02562 * 13 12 10 30 30 H 1.08002 * 119.91862 * 0.27367 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0711 -1.1966 5 6 2.7249 3.3813 -1.1956 6 16 3.0190 4.2152 -2.7197 7 6 2.9551 4.0326 0.0105 8 6 2.7231 3.3763 1.2028 9 6 2.9729 4.0813 2.5111 10 6 4.3957 3.8428 2.9466 11 1 5.0532 3.2405 2.3371 12 6 4.8582 4.3933 4.1230 13 7 4.0577 5.1271 4.8649 14 14 6.6217 4.0971 4.6631 15 1 7.5506 4.6236 3.6311 16 1 6.8683 4.7928 5.9516 17 1 6.8483 2.6396 4.8358 18 6 2.2626 2.0720 1.1980 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 2.0819 1.5620 -2.1319 25 1 4.3053 3.9225 -2.9814 26 1 3.3143 5.0511 0.0151 27 1 2.8061 5.1511 2.3850 28 1 2.2913 3.6942 3.2685 29 1 4.3832 5.5148 5.6923 30 1 2.0861 1.5595 2.1322 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307190323.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:22 Heat of formation + Delta-G solvation = -0.639958 kcal Electronic energy + Delta-G solvation = -12489.468934 eV Core-core repulsion = 10374.840621 eV Total energy + Delta-G solvation = -2114.628313 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.96711 -34.38592 -33.07132 -31.23214 -29.17289 -27.14195 -23.73238 -23.37139 -21.72930 -19.66425 -17.31182 -16.38908 -15.87861 -15.27102 -14.83447 -14.42429 -13.69063 -13.41728 -13.06999 -12.58767 -12.30209 -11.88863 -11.65401 -11.39689 -11.19426 -11.04145 -10.85518 -10.71065 -10.50351 -10.16434 -9.58529 -9.53217 -8.48075 -8.26823 -7.94870 -7.93810 -6.09999 -4.14454 1.41002 1.92195 2.07256 3.07319 3.27650 3.32285 3.35036 4.21187 4.42627 4.99473 5.15645 5.25032 5.45046 5.50644 5.67180 5.76271 5.84186 5.96712 6.01623 6.14435 6.30212 6.34680 6.62057 6.80541 6.97175 7.04931 7.39957 7.54213 7.72607 7.85150 8.24147 8.90066 9.49687 10.99878 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.007815 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.144402 B = 3581.778171 C = 4302.726480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.098 4.098 5 C -0.106 4.106 6 S -0.148 6.148 7 C -0.079 4.079 8 C -0.038 4.038 9 C 0.049 3.951 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 C -0.093 4.093 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.121 0.879 25 H 0.070 0.930 26 H 0.128 0.872 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -6.882 -10.163 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.119 4.119 5 C -0.218 4.218 6 S 0.009 5.991 7 C -0.099 4.099 8 C -0.039 4.039 9 C 0.012 3.988 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.723 3.277 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.111 4.111 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.139 0.861 25 H 0.034 0.966 26 H 0.146 0.854 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.615 -6.253 -10.806 13.311 hybrid contribution 1.923 -0.814 1.121 2.370 sum -2.692 -7.067 -9.686 12.288 Atomic orbital electron populations 1.21749 0.94999 1.01217 1.02345 1.20482 0.95988 0.92841 1.02450 1.19823 1.00771 0.96094 0.93018 1.21105 1.00129 0.93202 0.97470 1.21043 1.09219 0.97092 0.94418 1.85674 1.16693 1.69948 1.26799 1.21496 0.97747 1.00039 0.90645 1.20732 0.92342 0.93808 0.97066 1.18364 0.97361 0.95555 0.87524 1.20995 0.95917 1.32205 1.06285 0.92639 1.24997 0.97762 0.94991 0.96417 1.69940 1.35639 1.33399 1.14092 0.86601 0.84732 0.78466 0.77924 1.20195 1.21100 1.20157 1.21179 0.98097 0.94682 0.97138 0.92651 0.92795 0.92376 0.91530 0.91066 0.86150 0.96552 0.85366 0.95043 0.95063 0.92674 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.90 37.16 0.37 -1.26 16 2 C -0.08 -1.00 6.06 -27.88 -0.17 -1.17 16 3 C -0.10 -1.53 5.13 -104.65 -0.54 -2.06 16 4 C -0.10 -1.57 9.45 -39.36 -0.37 -1.95 16 5 C -0.11 -1.85 6.11 -39.04 -0.24 -2.09 16 6 S -0.15 -2.26 25.78 -107.50 -2.77 -5.03 16 7 C -0.08 -1.56 9.45 -39.37 -0.37 -1.93 16 8 C -0.04 -0.80 5.07 -104.66 -0.53 -1.33 16 9 C 0.05 1.23 5.10 -29.04 -0.15 1.09 16 10 C -0.52 -14.25 9.09 -34.44 -0.31 -14.56 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 14 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.09 -1.75 9.35 -39.53 -0.37 -2.12 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 23 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 24 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 25 H 0.07 1.02 9.07 97.61 0.89 1.90 16 26 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 27 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 28 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 276.14 15.07 4.16 4.16 Total: -1.00 -28.40 276.14 -8.54 -36.94 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -2.87 Total: -1.32 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.78 Total: -25.80 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.74 Total: -25.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.77 Total: -5.03 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.40 -8.54 -36.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307190323.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.300 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds