Wall clock time and date at job start Mon Mar 30 2020 02:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.47022 * 2 1 4 4 C 1.38110 * 119.95834 * 269.99886 * 3 2 1 5 5 C 1.38951 * 119.91726 * 179.97438 * 4 3 2 6 6 S 1.76202 * 120.07906 * 180.02562 * 5 4 3 7 7 C 1.38992 * 119.84228 * 0.02562 * 5 4 3 8 8 C 1.38060 * 119.92003 * 359.97438 * 7 5 4 9 9 C 1.50701 * 119.96503 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47169 * 270.02743 * 9 8 7 11 11 H 1.08008 * 119.99687 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00415 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99523 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00398 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47148 * 59.99675 * 14 12 10 16 16 H 1.48495 * 109.47481 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47287 * 299.99962 * 14 12 10 18 18 C 1.38281 * 119.96230 * 89.99982 * 3 2 1 19 19 H 1.08995 * 109.47078 * 60.00193 * 1 2 3 20 20 H 1.08998 * 109.46620 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47106 * 300.00061 * 1 2 3 22 22 H 1.09000 * 109.47106 * 239.99939 * 2 1 3 23 23 H 1.09003 * 109.46927 * 119.99538 * 2 1 3 24 24 H 1.08003 * 120.03694 * 0.02562 * 4 3 2 25 25 H 1.34492 * 102.99956 * 269.97740 * 6 5 4 26 26 H 1.08000 * 120.04114 * 180.02562 * 7 5 4 27 27 H 1.09001 * 109.46816 * 30.02305 * 9 8 7 28 28 H 1.08998 * 109.47649 * 150.02014 * 9 8 7 29 29 H 0.97000 * 119.99905 * 180.02562 * 13 12 10 30 30 H 1.08002 * 119.91862 * 0.27367 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2623 2.0711 -1.1966 5 6 2.7249 3.3813 -1.1956 6 16 3.0190 4.2152 -2.7197 7 6 2.9551 4.0326 0.0105 8 6 2.7231 3.3763 1.2028 9 6 2.9729 4.0813 2.5111 10 6 4.3957 3.8428 2.9466 11 1 5.0532 3.2405 2.3371 12 6 4.8582 4.3933 4.1230 13 7 4.0577 5.1271 4.8649 14 14 6.6217 4.0971 4.6631 15 1 7.5506 4.6236 3.6311 16 1 6.8683 4.7928 5.9516 17 1 6.8483 2.6396 4.8358 18 6 2.2626 2.0720 1.1980 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 2.0819 1.5620 -2.1319 25 1 4.3053 3.9225 -2.9814 26 1 3.3143 5.0511 0.0151 27 1 2.8061 5.1511 2.3850 28 1 2.2913 3.6942 3.2685 29 1 4.3832 5.5148 5.6923 30 1 2.0861 1.5595 2.1322 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307190323.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:22 Heat of formation + Delta-G solvation = -14.797175 kcal Electronic energy + Delta-G solvation = -12490.082837 eV Core-core repulsion = 10374.840621 eV Total energy + Delta-G solvation = -2115.242216 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.38809 -35.93934 -34.74250 -32.93771 -30.43793 -28.98909 -25.39306 -24.77724 -23.15394 -21.09965 -18.62224 -18.49748 -17.30607 -16.64128 -16.60596 -15.90262 -14.83499 -14.64833 -14.51771 -14.34357 -13.82921 -13.35975 -13.22566 -13.00790 -12.65446 -12.60119 -12.44866 -12.20384 -11.85804 -11.62404 -11.49238 -11.25618 -10.63720 -9.66600 -9.47659 -9.15719 -8.24027 -6.37488 0.03225 0.49575 0.74014 1.37044 1.39124 1.47663 1.83011 2.36091 2.81878 3.07150 3.82580 3.99994 4.21876 4.35732 4.40741 4.56418 4.60121 4.66909 4.86960 5.08528 5.13148 5.16784 5.28036 5.30989 5.36469 5.44613 5.62733 5.70454 5.93158 5.99564 6.15308 6.74408 7.31171 8.85489 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.007815 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.144402 B = 3581.778171 C = 4302.726480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.084 4.084 4 C -0.087 4.087 5 C -0.112 4.112 6 S -0.127 6.127 7 C -0.096 4.096 8 C -0.065 4.065 9 C 0.058 3.942 10 C -0.532 4.532 11 H 0.052 0.948 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.963 3.037 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.267 1.267 18 C -0.104 4.104 19 H 0.058 0.942 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.155 0.845 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.004 0.996 28 H 0.008 0.992 29 H 0.267 0.733 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 -8.756 -11.934 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.086 4.086 4 C -0.108 4.108 5 C -0.224 4.224 6 S 0.030 5.970 7 C -0.117 4.117 8 C -0.067 4.067 9 C 0.021 3.979 10 C -0.570 4.570 11 H 0.071 0.929 12 C -0.191 4.191 13 N -0.567 5.567 14 Si 0.788 3.212 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.191 1.191 18 C -0.122 4.122 19 H 0.077 0.923 20 H 0.096 0.904 21 H 0.063 0.937 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.173 0.827 25 H 0.044 0.956 26 H 0.134 0.866 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.076 0.924 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.181 -8.133 -12.586 15.557 hybrid contribution 1.733 -0.240 1.587 2.362 sum -2.448 -8.373 -10.999 14.038 Atomic orbital electron populations 1.21737 0.93794 1.02668 1.01886 1.20586 0.96890 0.90297 1.03860 1.20193 0.98886 0.97723 0.91799 1.21533 0.98041 0.92438 0.98769 1.21232 1.08614 0.97862 0.94692 1.85587 1.17184 1.69949 1.24276 1.21405 0.99064 0.99843 0.91379 1.20397 0.95485 0.95151 0.95664 1.18089 0.96090 0.94244 0.89458 1.21318 0.97025 1.32120 1.06562 0.92928 1.25898 1.02246 0.94578 0.96422 1.70063 1.37739 1.34333 1.14573 0.85527 0.79264 0.78790 0.77668 1.19537 1.20344 1.19146 1.21221 0.98555 0.93852 0.98551 0.92294 0.90432 0.93710 0.89060 0.90770 0.82738 0.95636 0.86564 0.97785 0.97336 0.92440 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.90 71.98 0.71 -2.05 16 2 C -0.08 -1.72 6.06 29.85 0.18 -1.54 16 3 C -0.08 -2.53 5.13 -19.88 -0.10 -2.63 16 4 C -0.09 -2.55 9.45 22.41 0.21 -2.34 16 5 C -0.11 -3.77 6.11 22.62 0.14 -3.63 16 6 S -0.13 -3.60 25.78 -56.49 -1.46 -5.05 16 7 C -0.10 -3.90 9.45 22.41 0.21 -3.68 16 8 C -0.07 -2.88 5.07 -19.89 -0.10 -2.98 16 9 C 0.06 3.12 5.10 29.10 0.15 3.27 16 10 C -0.53 -30.43 9.09 25.60 0.23 -30.19 16 11 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 12 C 0.01 0.41 5.46 84.65 0.46 0.87 16 13 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 14 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 C -0.10 -3.92 9.35 22.30 0.21 -3.72 16 19 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 23 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 24 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 25 H 0.08 2.10 9.07 73.35 0.67 2.77 16 26 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 27 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 28 H 0.01 0.47 8.08 -2.39 -0.02 0.45 16 29 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.26 276.14 4.95 -57.32 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 1.79 Total: 5.63 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 2.30 Total: -48.62 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.28 Total: -55.46 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.46 Total: -5.05 kcal Total: -62.26 4.95 -57.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307190323.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.520 kcal (2) G-P(sol) polarization free energy of solvation -62.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds