Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35773 * 117.00262 * 2 1 4 4 C 1.39101 * 119.85111 * 359.97438 * 3 2 1 5 5 C 1.36537 * 120.31283 * 180.02562 * 4 3 2 6 6 C 1.40488 * 120.00439 * 359.78197 * 5 4 3 7 7 C 1.46142 * 120.14941 * 180.23739 * 6 5 4 8 8 C 1.38264 * 120.00255 * 210.34323 * 7 6 5 9 9 C 1.38783 * 119.99983 * 7.60655 * 8 7 6 10 10 H 1.08002 * 119.99670 * 14.86227 * 9 8 7 11 11 C 1.40580 * 120.00183 * 194.85970 * 9 8 7 12 12 N 1.30589 * 119.99726 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99867 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47291 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47150 * 120.00383 * 13 11 9 16 16 H 1.48502 * 109.47220 * 240.00160 * 13 11 9 17 17 C 1.40490 * 119.70179 * 0.46502 * 6 5 4 18 18 C 1.37725 * 119.69534 * 359.52050 * 17 6 5 19 19 F 1.35106 * 120.00645 * 180.23176 * 18 17 6 20 20 H 1.08996 * 109.46789 * 60.00131 * 1 2 3 21 21 H 1.09001 * 109.46763 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46802 * 300.00381 * 1 2 3 23 23 H 1.07999 * 119.83832 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.99907 * 180.02562 * 5 4 3 25 25 H 1.08009 * 120.00122 * 30.34762 * 7 6 5 26 26 H 1.08004 * 120.00035 * 187.60723 * 8 7 6 27 27 H 0.97004 * 119.99443 * 179.97438 * 12 11 9 28 28 H 1.08005 * 120.15310 * 179.79048 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2849 2.3744 -0.0005 5 6 1.8950 3.5959 -0.0011 6 6 3.2973 3.6807 0.0036 7 6 3.9536 4.9865 0.0082 8 6 5.1893 5.1414 -0.5924 9 6 5.7350 4.1034 -1.3346 10 1 5.1131 3.2773 -1.6463 11 6 7.0974 4.1272 -1.6806 12 7 7.8495 5.1259 -1.3032 13 14 7.8320 2.7297 -2.6789 14 1 6.7778 1.7276 -2.9780 15 1 8.3807 3.2651 -3.9508 16 1 8.9216 2.0859 -1.9020 17 6 4.0659 2.5047 -0.0012 18 6 3.4377 1.2791 -0.0003 19 9 4.1706 0.1442 -0.0001 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.2067 2.3121 -0.0005 24 1 1.2995 4.4969 -0.0011 25 1 3.4734 5.8306 0.4810 26 1 5.7298 6.0701 -0.4841 27 1 8.7896 5.1421 -1.5417 28 1 5.1444 2.5615 -0.0011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379486272.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = -57.794344 kcal Electronic energy + Delta-G solvation = -14499.527359 eV Core-core repulsion = 11816.207470 eV Total energy + Delta-G solvation = -2683.319889 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.92564 -39.11677 -36.91274 -34.51225 -31.83225 -29.87046 -28.32863 -27.04355 -25.09254 -21.76950 -21.55680 -19.09488 -17.80804 -16.88388 -16.02792 -15.65023 -15.45842 -14.93646 -14.36459 -14.04418 -13.54805 -13.42823 -12.93069 -12.43170 -11.95043 -11.65367 -11.55829 -11.34864 -11.15605 -10.77759 -10.46699 -10.45088 -10.08398 -9.75108 -9.34219 -8.31084 -7.93459 -7.18857 -6.91726 -4.46869 2.05044 2.16891 2.82896 2.96432 3.05708 3.60362 3.75295 3.81289 4.61636 5.08388 5.24311 5.30821 5.40491 5.57859 5.67690 5.93200 6.23506 6.34753 6.56933 6.78918 6.84355 7.04549 7.08254 7.18887 7.56378 7.62641 7.77431 8.05897 8.15282 8.34854 8.71008 8.89168 9.81087 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.008764 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.252721 B = 3193.947010 C = 3850.006251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.322 6.322 3 C 0.006 3.994 4 C -0.161 4.161 5 C -0.155 4.155 6 C 0.058 3.942 7 C -0.413 4.413 8 C 0.077 3.923 9 C -0.429 4.429 10 H 0.097 0.903 11 C 0.071 3.929 12 N -0.784 5.784 13 Si 0.911 3.089 14 H -0.251 1.251 15 H -0.268 1.268 16 H -0.267 1.267 17 C -0.163 4.163 18 C 0.080 3.920 19 F -0.149 7.149 20 H 0.048 0.952 21 H 0.089 0.911 22 H 0.048 0.952 23 H 0.116 0.884 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.290 0.710 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 -4.810 0.108 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.237 6.237 3 C -0.038 4.038 4 C -0.180 4.180 5 C -0.174 4.174 6 C 0.058 3.942 7 C -0.434 4.434 8 C 0.055 3.945 9 C -0.455 4.455 10 H 0.115 0.885 11 C -0.152 4.152 12 N -0.407 5.407 13 Si 0.734 3.266 14 H -0.174 1.174 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.182 4.182 18 C 0.061 3.939 19 F -0.128 7.128 20 H 0.067 0.933 21 H 0.108 0.892 22 H 0.066 0.934 23 H 0.134 0.866 24 H 0.131 0.869 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.085 -4.923 0.093 7.828 hybrid contribution 0.228 -0.477 -0.439 0.688 sum -5.857 -5.401 -0.346 7.975 Atomic orbital electron populations 1.22859 0.79854 1.02688 1.00743 1.85968 1.20106 1.27091 1.90536 1.18772 0.90481 0.84680 1.09847 1.20485 0.98523 0.92002 1.06960 1.20816 0.94673 0.95946 1.05959 1.18703 0.91006 0.93324 0.91192 1.20877 1.02937 0.93959 1.25629 1.20545 0.90853 0.95736 0.87350 1.20203 0.93534 1.07472 1.24295 0.88546 1.26444 0.98044 0.96791 0.93908 1.69526 1.08130 1.28658 1.34362 0.86157 0.79954 0.80986 0.79514 1.17369 1.19299 1.19154 1.21709 1.02256 0.89147 1.05091 1.17041 0.85642 0.82591 1.08663 1.91396 1.77154 1.49664 1.94591 0.93345 0.89224 0.93361 0.86597 0.86890 0.89903 0.89583 0.89888 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.80 101.05 0.99 1.44 15 2 O -0.32 -6.08 10.35 -19.03 -0.20 -6.28 15 3 C 0.01 0.13 6.71 -38.83 -0.26 -0.13 15 4 C -0.16 -3.05 8.96 -39.88 -0.36 -3.41 15 5 C -0.16 -3.19 9.75 -39.35 -0.38 -3.57 15 6 C 0.06 1.36 5.49 -105.03 -0.58 0.79 15 7 C -0.41 -10.04 9.98 -36.40 -0.36 -10.41 15 8 C 0.08 1.94 9.35 -39.37 -0.37 1.57 15 9 C -0.43 -10.77 6.59 -38.50 -0.25 -11.03 15 10 H 0.10 2.46 5.29 -52.49 -0.28 2.18 15 11 C 0.07 1.67 5.51 -17.20 -0.09 1.58 15 12 N -0.78 -18.91 12.91 55.58 0.72 -18.19 15 13 Si 0.91 18.13 29.57 -169.99 -5.03 13.11 15 14 H -0.25 -5.14 7.11 56.52 0.40 -4.74 15 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 17 C -0.16 -3.84 7.51 -38.92 -0.29 -4.14 15 18 C 0.08 1.82 7.30 -39.34 -0.29 1.53 15 19 F -0.15 -3.39 17.11 2.25 0.04 -3.35 15 20 H 0.05 0.58 7.65 -51.93 -0.40 0.19 15 21 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.05 0.57 7.65 -51.93 -0.40 0.18 15 23 H 0.12 1.79 6.26 -52.49 -0.33 1.47 15 24 H 0.11 2.09 8.06 -52.48 -0.42 1.66 15 25 H 0.08 1.92 8.06 -52.48 -0.42 1.50 15 26 H 0.09 2.21 7.50 -52.48 -0.39 1.82 15 27 H 0.29 6.27 8.29 -40.82 -0.34 5.93 15 28 H 0.15 3.75 5.72 -52.48 -0.30 3.45 15 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -26.68 250.82 -5.43 -32.11 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -2.50 Total: 4.58 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -2.25 Total: -25.76 kcal Atomic # 7 Polarization: -18.91 SS G_CDS: 0.72 Total: -18.19 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.20 Total: -6.28 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.68 -5.43 -32.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379486272.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.686 kcal (2) G-P(sol) polarization free energy of solvation -26.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds