Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35773 * 117.00262 * 2 1 4 4 C 1.39101 * 119.85111 * 359.97438 * 3 2 1 5 5 C 1.36537 * 120.31283 * 180.02562 * 4 3 2 6 6 C 1.40488 * 120.00439 * 359.78197 * 5 4 3 7 7 C 1.46142 * 120.14941 * 180.23739 * 6 5 4 8 8 C 1.38264 * 120.00255 * 210.34323 * 7 6 5 9 9 C 1.38783 * 119.99983 * 7.60655 * 8 7 6 10 10 H 1.08002 * 119.99670 * 14.86227 * 9 8 7 11 11 C 1.40580 * 120.00183 * 194.85970 * 9 8 7 12 12 N 1.30589 * 119.99726 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99867 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47291 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47150 * 120.00383 * 13 11 9 16 16 H 1.48502 * 109.47220 * 240.00160 * 13 11 9 17 17 C 1.40490 * 119.70179 * 0.46502 * 6 5 4 18 18 C 1.37725 * 119.69534 * 359.52050 * 17 6 5 19 19 F 1.35106 * 120.00645 * 180.23176 * 18 17 6 20 20 H 1.08996 * 109.46789 * 60.00131 * 1 2 3 21 21 H 1.09001 * 109.46763 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46802 * 300.00381 * 1 2 3 23 23 H 1.07999 * 119.83832 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.99907 * 180.02562 * 5 4 3 25 25 H 1.08009 * 120.00122 * 30.34762 * 7 6 5 26 26 H 1.08004 * 120.00035 * 187.60723 * 8 7 6 27 27 H 0.97004 * 119.99443 * 179.97438 * 12 11 9 28 28 H 1.08005 * 120.15310 * 179.79048 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2849 2.3744 -0.0005 5 6 1.8950 3.5959 -0.0011 6 6 3.2973 3.6807 0.0036 7 6 3.9536 4.9865 0.0082 8 6 5.1893 5.1414 -0.5924 9 6 5.7350 4.1034 -1.3346 10 1 5.1131 3.2773 -1.6463 11 6 7.0974 4.1272 -1.6806 12 7 7.8495 5.1259 -1.3032 13 14 7.8320 2.7297 -2.6789 14 1 6.7778 1.7276 -2.9780 15 1 8.3807 3.2651 -3.9508 16 1 8.9216 2.0859 -1.9020 17 6 4.0659 2.5047 -0.0012 18 6 3.4377 1.2791 -0.0003 19 9 4.1706 0.1442 -0.0001 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.2067 2.3121 -0.0005 24 1 1.2995 4.4969 -0.0011 25 1 3.4734 5.8306 0.4810 26 1 5.7298 6.0701 -0.4841 27 1 8.7896 5.1421 -1.5417 28 1 5.1444 2.5615 -0.0011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379486272.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = -72.061090 kcal Electronic energy + Delta-G solvation = -14500.146011 eV Core-core repulsion = 11816.207470 eV Total energy + Delta-G solvation = -2683.938542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.67650 -40.65845 -38.53345 -36.29646 -33.61244 -31.52608 -29.99527 -28.39603 -26.80643 -23.42854 -23.25646 -20.87652 -19.49445 -18.55206 -17.66389 -17.36532 -16.93875 -16.62919 -15.90654 -15.55833 -15.26495 -15.04840 -14.60133 -14.03865 -13.65812 -13.22798 -13.13310 -12.79715 -12.72743 -12.49857 -12.03250 -11.96295 -11.76157 -11.47571 -11.18078 -10.09125 -9.65426 -8.96714 -8.66125 -6.34238 0.33421 0.47979 1.21378 1.32804 1.47560 1.84947 2.10974 2.45477 2.87320 3.35128 3.48494 4.00880 4.22336 4.46165 4.46308 4.57901 4.66225 4.74868 4.87622 4.99513 5.06845 5.30576 5.36920 5.40868 5.78528 5.86452 6.04675 6.22621 6.44316 6.60899 6.82328 7.00887 8.06646 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.008764 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.252721 B = 3193.947010 C = 3850.006251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.024 3.976 4 C -0.153 4.153 5 C -0.142 4.142 6 C 0.028 3.972 7 C -0.420 4.420 8 C 0.055 3.945 9 C -0.451 4.451 10 H 0.087 0.913 11 C 0.036 3.964 12 N -0.813 5.813 13 Si 0.974 3.026 14 H -0.264 1.264 15 H -0.251 1.251 16 H -0.258 1.258 17 C -0.171 4.171 18 C 0.050 3.950 19 F -0.155 7.155 20 H 0.063 0.937 21 H 0.119 0.881 22 H 0.065 0.935 23 H 0.162 0.838 24 H 0.138 0.862 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.301 0.699 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 -6.060 -0.204 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C -0.021 4.021 4 C -0.171 4.171 5 C -0.161 4.161 6 C 0.028 3.972 7 C -0.441 4.441 8 C 0.034 3.966 9 C -0.477 4.477 10 H 0.105 0.895 11 C -0.183 4.183 12 N -0.437 5.437 13 Si 0.794 3.206 14 H -0.188 1.188 15 H -0.175 1.175 16 H -0.182 1.182 17 C -0.190 4.190 18 C 0.031 3.969 19 F -0.134 7.134 20 H 0.082 0.918 21 H 0.137 0.863 22 H 0.084 0.916 23 H 0.180 0.820 24 H 0.156 0.844 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.163 -6.162 -0.210 10.230 hybrid contribution 0.621 -0.188 -0.258 0.698 sum -7.542 -6.350 -0.468 9.871 Atomic orbital electron populations 1.23321 0.76469 1.05368 1.02248 1.85969 1.23534 1.26068 1.89974 1.18931 0.89893 0.86212 1.07067 1.20888 1.00677 0.90420 1.05100 1.21124 0.93471 0.97822 1.03634 1.18826 0.92612 0.92540 0.93253 1.21034 1.02841 0.94859 1.25334 1.20562 0.91746 0.95556 0.88731 1.20190 0.94539 1.07422 1.25579 0.89480 1.27132 0.97779 0.98863 0.94553 1.69537 1.08964 1.29953 1.35235 0.85250 0.78847 0.77789 0.78760 1.18757 1.17515 1.18212 1.21557 1.01550 0.90054 1.05873 1.17238 0.86983 0.82132 1.10562 1.91366 1.77528 1.49742 1.94807 0.91814 0.86295 0.91633 0.82030 0.84374 0.89337 0.91066 0.88760 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.80 113.37 1.11 1.54 15 2 O -0.34 -11.73 10.35 -91.01 -0.94 -12.67 15 3 C 0.02 0.94 6.71 22.76 0.15 1.09 15 4 C -0.15 -5.19 8.96 22.08 0.20 -4.99 15 5 C -0.14 -5.47 9.75 22.42 0.22 -5.25 15 6 C 0.03 1.32 5.49 -20.13 -0.11 1.21 15 7 C -0.42 -20.87 9.98 24.33 0.24 -20.62 15 8 C 0.06 2.93 9.35 22.41 0.21 3.14 15 9 C -0.45 -23.58 6.59 22.97 0.15 -23.43 15 10 H 0.09 4.63 5.29 -2.91 -0.02 4.62 15 11 C 0.04 1.76 5.51 85.45 0.47 2.23 15 12 N -0.81 -40.18 12.91 21.94 0.28 -39.89 15 13 Si 0.97 37.68 29.57 68.60 2.03 39.71 15 14 H -0.26 -10.65 7.11 99.48 0.71 -9.94 15 15 H -0.25 -8.98 7.11 99.48 0.71 -8.27 15 16 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 17 C -0.17 -8.23 7.51 22.70 0.17 -8.06 15 18 C 0.05 2.27 7.30 22.43 0.16 2.44 15 19 F -0.16 -7.10 17.11 44.97 0.77 -6.33 15 20 H 0.06 1.20 7.65 -2.39 -0.02 1.18 15 21 H 0.12 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.07 1.21 7.65 -2.39 -0.02 1.19 15 23 H 0.16 4.02 6.26 -2.91 -0.02 4.00 15 24 H 0.14 4.60 8.06 -2.91 -0.02 4.57 15 25 H 0.09 4.15 8.06 -2.91 -0.02 4.13 15 26 H 0.07 3.88 7.50 -2.91 -0.02 3.85 15 27 H 0.30 13.15 8.29 -92.71 -0.77 12.39 15 28 H 0.13 6.85 5.72 -2.91 -0.02 6.84 15 Total: -1.00 -58.60 250.82 6.30 -52.30 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.18 Total: 17.58 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 2.98 Total: -50.70 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.28 Total: -39.89 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.94 Total: -12.67 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.77 Total: -6.33 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -58.60 6.30 -52.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379486272.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.760 kcal (2) G-P(sol) polarization free energy of solvation -58.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds