Wall clock time and date at job start Mon Mar 30 2020 02:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38428 * 120.00239 * 2 1 4 4 C 1.39880 * 119.98418 * 359.97438 * 3 2 1 5 5 N 1.31472 * 120.01976 * 179.97438 * 4 3 2 6 6 C 1.33335 * 120.00267 * 0.02562 * 5 4 3 7 7 C 1.47675 * 120.01272 * 179.97438 * 6 5 4 8 8 O 1.21613 * 119.99941 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00036 * 359.72254 * 7 6 5 10 10 C 1.36833 * 119.99803 * 180.27726 * 9 7 6 11 11 H 1.08002 * 120.00481 * 0.02562 * 10 9 7 12 12 C 1.39068 * 120.00087 * 179.97438 * 10 9 7 13 13 N 1.31354 * 119.99778 * 359.97438 * 12 10 9 14 14 Si 1.86789 * 120.00370 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47675 * 89.99850 * 14 12 10 16 16 H 1.48501 * 109.47162 * 210.00022 * 14 12 10 17 17 H 1.48503 * 109.47180 * 329.99715 * 14 12 10 18 18 C 1.39504 * 119.97553 * 0.24536 * 6 5 4 19 19 N 1.32036 * 119.97607 * 359.46119 * 18 6 5 20 20 H 1.09001 * 109.47721 * 59.99461 * 1 2 3 21 21 H 1.08997 * 109.47538 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47166 * 300.00055 * 1 2 3 23 23 H 0.96992 * 120.00035 * 180.02562 * 2 1 3 24 24 H 1.08001 * 119.99379 * 359.97438 * 4 3 2 25 25 H 0.97000 * 119.99736 * 0.27181 * 9 7 6 26 26 H 0.96996 * 120.00299 * 180.02562 * 13 12 10 27 27 H 1.07994 * 120.01260 * 179.75453 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1571 1.1988 0.0000 4 6 1.4575 2.4100 -0.0005 5 7 2.1142 3.5490 0.0000 6 6 3.4475 3.5498 0.0005 7 6 4.1854 4.8290 0.0005 8 8 5.4015 4.8295 0.0014 9 7 3.5110 5.9960 -0.0057 10 6 4.1948 7.1812 -0.0114 11 1 5.2748 7.1817 -0.0114 12 6 3.4990 8.3853 -0.0183 13 7 2.1855 8.3848 -0.0199 14 14 4.4323 10.0033 -0.0269 15 1 4.6803 10.4245 -1.4292 16 1 3.6291 11.0417 0.6671 17 1 5.7297 9.8301 0.6747 18 6 4.1453 2.3418 -0.0047 19 7 3.4849 1.1985 0.0007 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.9499 -0.8400 -0.0004 24 1 0.3774 2.4097 -0.0014 25 1 2.5410 5.9955 -0.0061 26 1 1.7002 9.2246 -0.0251 27 1 5.2252 2.3418 -0.0083 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599233750.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:37 Heat of formation + Delta-G solvation = -10.078473 kcal Electronic energy + Delta-G solvation = -14276.482403 eV Core-core repulsion = 11647.444342 eV Total energy + Delta-G solvation = -2629.038061 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.086 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.07276 -39.83364 -37.15076 -36.11299 -35.07025 -33.28741 -31.40551 -28.01937 -26.80208 -25.65892 -24.22092 -21.71385 -20.12645 -19.32483 -18.56066 -17.73282 -16.91133 -16.38958 -16.14197 -15.81646 -15.64052 -15.33039 -15.06184 -14.26759 -14.05001 -13.56067 -12.97022 -12.95419 -12.62124 -12.44105 -12.43175 -12.10024 -11.58193 -11.18968 -10.84876 -10.10777 -10.04235 -8.91348 -8.53536 -5.98585 -0.29570 0.16212 1.40990 1.42415 1.57120 2.00926 2.01993 2.28083 2.83822 2.97171 3.30259 3.35959 3.45417 3.61210 4.15652 4.34231 4.47373 4.57413 4.69795 4.98720 5.18304 5.35545 5.70192 5.90403 6.30862 6.42230 6.57277 6.90871 7.02182 7.46977 8.00903 8.63481 Molecular weight = 222.09amu Principal moments of inertia in cm(-1) A = 0.056071 B = 0.006213 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.248008 B = 4505.862100 C = 4989.952667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.698 5.698 3 C 0.359 3.641 4 C 0.003 3.997 5 N -0.408 5.408 6 C -0.044 4.044 7 C 0.481 3.519 8 O -0.632 6.632 9 N -0.538 5.538 10 C -0.340 4.340 11 H 0.089 0.911 12 C -0.011 4.011 13 N -0.908 5.908 14 Si 1.004 2.996 15 H -0.267 1.267 16 H -0.267 1.267 17 H -0.268 1.268 18 C 0.155 3.845 19 N -0.519 5.519 20 H 0.068 0.932 21 H 0.114 0.886 22 H 0.068 0.932 23 H 0.416 0.584 24 H 0.202 0.798 25 H 0.402 0.598 26 H 0.283 0.717 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 -14.372 -0.005 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.330 5.330 3 C 0.115 3.885 4 C -0.171 4.171 5 N -0.124 5.124 6 C -0.182 4.182 7 C 0.268 3.732 8 O -0.522 6.522 9 N -0.171 5.171 10 C -0.470 4.470 11 H 0.107 0.893 12 C -0.213 4.213 13 N -0.547 5.547 14 Si 0.826 3.174 15 H -0.192 1.192 16 H -0.191 1.191 17 H -0.193 1.193 18 C -0.006 4.006 19 N -0.243 5.243 20 H 0.087 0.913 21 H 0.133 0.867 22 H 0.086 0.914 23 H 0.252 0.748 24 H 0.218 0.782 25 H 0.237 0.763 26 H 0.093 0.907 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.417 -14.141 0.003 15.968 hybrid contribution 0.142 0.498 -0.010 0.518 sum -7.275 -13.642 -0.007 15.461 Atomic orbital electron populations 1.22073 0.75865 1.05754 1.02671 1.44343 1.07560 1.03767 1.77295 1.19887 0.89316 0.89439 0.89811 1.23739 1.02519 0.85987 1.04899 1.68178 1.07898 1.30732 1.05549 1.21573 0.90673 0.95362 1.10606 1.17664 0.86701 0.83497 0.85306 1.90552 1.14173 1.87418 1.60022 1.41832 1.10012 1.04530 1.60713 1.19921 0.93298 0.83670 1.50129 0.89270 1.26322 0.96608 1.03007 0.95337 1.69698 1.07283 1.29982 1.47748 0.84775 0.77911 0.75726 0.78970 1.19204 1.19145 1.19250 1.23299 1.01614 0.85853 0.89851 1.68110 1.07235 1.28796 1.20152 0.91342 0.86729 0.91354 0.74768 0.78184 0.76282 0.90730 0.80531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.92 127.77 1.27 1.93 15 2 N -0.70 -11.54 5.86 -366.10 -2.15 -13.69 15 3 C 0.36 9.74 7.66 133.33 1.02 10.76 15 4 C 0.00 0.08 10.48 85.14 0.89 0.97 15 5 N -0.41 -16.36 9.69 -183.81 -1.78 -18.14 15 6 C -0.04 -1.95 6.74 41.72 0.28 -1.67 15 7 C 0.48 26.27 7.75 86.74 0.67 26.94 15 8 O -0.63 -37.55 15.90 -4.07 -0.06 -37.62 15 9 N -0.54 -30.82 5.27 -309.77 -1.63 -32.45 15 10 C -0.34 -20.27 9.68 84.11 0.81 -19.46 15 11 H 0.09 5.51 7.15 -2.91 -0.02 5.49 15 12 C -0.01 -0.61 5.50 84.96 0.47 -0.14 15 13 N -0.91 -50.62 13.05 21.68 0.28 -50.34 15 14 Si 1.00 43.18 29.55 68.60 2.03 45.21 15 15 H -0.27 -11.04 7.11 99.48 0.71 -10.34 15 16 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 18 C 0.15 5.98 10.76 84.97 0.91 6.89 15 19 N -0.52 -16.96 10.52 -191.66 -2.02 -18.98 15 20 H 0.07 0.55 7.93 -2.39 -0.02 0.53 15 21 H 0.11 0.28 8.14 -2.39 -0.02 0.26 15 22 H 0.07 0.55 7.93 -2.38 -0.02 0.53 15 23 H 0.42 5.73 8.95 -92.71 -0.83 4.90 15 24 H 0.20 4.13 6.71 -2.91 -0.02 4.11 15 25 H 0.40 22.70 7.23 -92.71 -0.67 22.03 15 26 H 0.28 14.49 8.31 -92.71 -0.77 13.72 15 27 H 0.18 6.67 7.63 -2.91 -0.02 6.65 15 Total: -1.00 -73.44 249.64 0.73 -72.71 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.27 Total: 27.07 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.33 Total: 26.23 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -7.29 Total: -133.60 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.06 Total: -37.62 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -73.44 0.73 -72.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599233750.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.628 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds