Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47500 * 2 1 4 4 H 1.09000 * 109.46836 * 54.99508 * 3 2 1 5 5 O 1.42902 * 109.47081 * 295.00153 * 3 2 1 6 6 C 1.50699 * 109.47142 * 174.99873 * 3 2 1 7 7 C 1.38116 * 120.03690 * 94.98164 * 6 3 2 8 8 C 1.38272 * 120.07118 * 180.02562 * 7 6 3 9 9 C 1.38329 * 120.13907 * 0.02562 * 8 7 6 10 10 C 1.38075 * 120.06751 * 359.97438 * 9 8 7 11 11 C 1.38857 * 120.03412 * 274.99761 * 6 3 2 12 12 O 1.35760 * 120.07113 * 0.02562 * 11 6 3 13 13 C 1.34822 * 117.00291 * 174.37770 * 12 11 6 14 14 H 1.08005 * 120.00320 * 5.05690 * 13 12 11 15 15 C 1.38656 * 120.00023 * 185.05913 * 13 12 11 16 16 N 1.31551 * 119.99935 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46909 * 60.00349 * 17 15 13 19 19 H 1.48497 * 109.46820 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47263 * 300.00393 * 17 15 13 21 21 H 1.08997 * 109.47490 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47451 * 300.00274 * 1 2 3 23 23 H 1.09010 * 109.46906 * 59.99718 * 1 2 3 24 24 H 1.09003 * 109.46957 * 239.99894 * 2 1 3 25 25 H 1.08998 * 109.46653 * 119.99924 * 2 1 3 26 26 H 0.96702 * 113.99862 * 299.99329 * 5 3 2 27 27 H 1.08002 * 119.96658 * 0.03728 * 7 6 3 28 28 H 1.08006 * 119.93406 * 180.02562 * 8 7 6 29 29 H 1.08000 * 119.96659 * 180.27477 * 9 8 7 30 30 H 1.07999 * 120.03524 * 180.02562 * 10 9 8 31 31 H 0.96999 * 120.00238 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5420 1.4442 0.1239 7 6 4.3290 1.5141 -1.0090 8 6 5.7071 1.5152 -0.8962 9 6 6.3020 1.4457 0.3508 10 6 5.5207 1.3756 1.4870 11 6 4.1360 1.3751 1.3770 12 8 3.3652 1.3054 2.4924 13 6 4.0024 1.1233 3.6665 14 1 5.0819 1.1216 3.7005 15 6 3.2719 0.9381 4.8303 16 7 1.9570 0.9407 4.7890 17 14 4.1548 0.6851 6.4570 18 1 5.0020 1.8691 6.7497 19 1 3.1550 0.5123 7.5412 20 1 5.0094 -0.5264 6.3732 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 2.0143 1.6542 -2.0139 27 1 3.8676 1.5682 -1.9839 28 1 6.3204 1.5704 -1.7835 29 1 7.3786 1.4513 0.4359 30 1 5.9857 1.3218 2.4603 31 1 1.4459 0.8108 5.6031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035625925.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -86.325435 kcal Electronic energy + Delta-G solvation = -15166.827045 eV Core-core repulsion = 12605.730260 eV Total energy + Delta-G solvation = -2561.096785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06567 -38.86932 -37.58445 -34.32374 -33.71183 -31.84095 -30.56501 -27.38543 -26.78884 -23.38085 -22.98407 -21.94543 -19.81767 -18.99536 -17.49592 -16.89420 -16.40292 -16.14622 -15.72194 -15.53942 -15.25312 -14.91449 -14.38057 -13.90250 -13.57776 -13.43333 -13.09753 -12.88650 -12.59937 -12.45748 -12.37120 -12.15562 -11.86100 -11.82085 -11.40991 -10.82031 -10.76848 -9.62852 -8.94650 -8.45873 -6.13354 0.54241 0.75405 1.33884 1.44114 1.49251 2.16950 2.83050 3.14210 3.50378 3.53536 3.78531 4.12000 4.14526 4.21117 4.30520 4.50702 4.61002 4.70095 4.82481 4.90080 5.02412 5.08881 5.15017 5.27649 5.34132 5.36797 5.66573 5.73478 5.76618 6.02000 6.24988 6.86893 6.98892 7.78498 8.76067 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.010310 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.991346 B = 2715.113826 C = 3682.867098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.174 3.826 4 H 0.063 0.937 5 O -0.561 6.561 6 C -0.202 4.202 7 C -0.069 4.069 8 C -0.191 4.191 9 C -0.077 4.077 10 C -0.250 4.250 11 C 0.117 3.883 12 O -0.220 6.220 13 C -0.416 4.416 14 H 0.098 0.902 15 C -0.018 4.018 16 N -0.914 5.914 17 Si 1.013 2.987 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.258 1.258 21 H 0.066 0.934 22 H 0.031 0.969 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.385 0.615 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.116 0.884 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 -1.737 -9.890 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.115 3.885 4 H 0.081 0.919 5 O -0.369 6.369 6 C -0.203 4.203 7 C -0.087 4.087 8 C -0.209 4.209 9 C -0.095 4.095 10 C -0.270 4.270 11 C 0.067 3.933 12 O -0.127 6.127 13 C -0.492 4.492 14 H 0.115 0.885 15 C -0.216 4.216 16 N -0.552 5.552 17 Si 0.832 3.168 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.183 1.183 21 H 0.085 0.915 22 H 0.050 0.950 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.235 0.765 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.160 0.840 30 H 0.134 0.866 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.610 -1.347 -9.312 10.078 hybrid contribution 0.549 -0.408 0.980 1.195 sum 4.159 -1.755 -8.332 9.477 Atomic orbital electron populations 1.21649 0.94402 1.01944 1.01672 1.22008 0.97362 0.95931 1.01998 1.20147 0.88941 0.93129 0.86332 0.91864 1.86558 1.76816 1.57713 1.15795 1.19981 0.97107 1.12024 0.91237 1.20906 0.93852 0.96842 0.97053 1.21167 0.94583 1.07388 0.97747 1.21201 1.00097 0.96354 0.91828 1.21321 0.93117 1.12196 1.00323 1.19709 0.91126 0.94636 0.87851 1.83932 1.35064 1.80535 1.13125 1.21728 0.92778 1.51716 0.82957 0.88497 1.26466 0.96451 0.96010 1.02651 1.70166 1.06740 1.48048 1.30244 0.84729 0.77585 0.79679 0.74759 1.18405 1.19638 1.18280 0.91526 0.94953 0.90865 0.89570 0.94210 0.76469 0.82813 0.83014 0.83983 0.86575 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.81 71.98 0.71 -3.81 16 2 C -0.14 -4.89 5.59 30.59 0.17 -4.72 16 3 C 0.17 6.93 2.93 29.85 0.09 7.01 16 4 H 0.06 3.13 7.70 -2.39 -0.02 3.11 16 5 O -0.56 -18.26 12.53 -148.98 -1.87 -20.13 16 6 C -0.20 -8.36 5.08 -19.75 -0.10 -8.46 16 7 C -0.07 -2.19 9.30 22.25 0.21 -1.99 16 8 C -0.19 -5.67 10.04 22.30 0.22 -5.45 16 9 C -0.08 -2.61 10.04 22.25 0.22 -2.39 16 10 C -0.25 -10.97 9.17 22.39 0.21 -10.76 16 11 C 0.12 5.81 6.62 22.58 0.15 5.96 16 12 O -0.22 -13.02 8.90 -22.77 -0.20 -13.22 16 13 C -0.42 -24.12 9.49 67.92 0.64 -23.48 16 14 H 0.10 5.21 5.20 -2.91 -0.02 5.19 16 15 C -0.02 -1.00 5.49 84.83 0.47 -0.53 16 16 N -0.91 -55.63 13.67 21.61 0.30 -55.33 16 17 Si 1.01 42.96 29.55 68.60 2.03 44.98 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 2.07 7.82 -2.38 -0.02 2.05 16 24 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.39 8.56 7.33 -74.06 -0.54 8.01 16 27 H 0.15 3.52 6.41 -2.91 -0.02 3.50 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -70.07 266.63 3.83 -66.24 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.60 Total: 26.06 kcal Atomic # 6 Polarization: -51.59 SS G_CDS: 2.98 Total: -48.60 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.30 Total: -55.33 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -2.07 Total: -33.34 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.07 3.83 -66.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035625925.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.087 kcal (2) G-P(sol) polarization free energy of solvation -70.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds