Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.09001 * 109.47100 * 55.00080 * 9 8 7 11 11 O 1.42892 * 109.47079 * 295.00417 * 9 8 7 12 12 C 1.50693 * 109.47130 * 174.99831 * 9 8 7 13 13 H 1.08000 * 120.00377 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00046 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00192 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.46686 * 90.00241 * 16 14 12 18 18 H 1.48497 * 109.47271 * 210.00219 * 16 14 12 19 19 H 1.48492 * 109.47327 * 330.00594 * 16 14 12 20 20 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 21 21 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 22 22 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 24 24 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 26 26 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 27 27 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 28 28 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 29 29 H 0.96702 * 113.99876 * 299.99403 * 11 9 8 30 30 H 0.96997 * 120.00485 * 179.97438 * 15 14 12 31 31 H 1.07997 * 120.02798 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0700 2.6244 1.4430 10 1 5.6813 1.7600 1.9814 11 8 5.6268 3.8227 2.0829 12 6 7.5764 2.5815 1.4448 13 1 8.1165 2.5401 0.5105 14 6 8.2651 2.5962 2.6391 15 7 7.6074 2.6471 3.7769 16 14 10.1324 2.5437 2.6413 17 1 10.6665 3.9288 2.6021 18 1 10.6071 1.8648 3.8738 19 1 10.6080 1.7959 1.4498 20 6 3.4311 1.2848 0.0003 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2128 2.3203 0.0108 25 1 1.3339 4.5114 0.0034 26 1 3.7922 4.6381 0.0022 27 1 5.9714 1.7294 -0.5140 28 1 5.8757 3.5068 -0.5126 29 1 5.9359 4.6337 1.6565 30 1 8.0918 2.6570 4.6171 31 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041205191.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = -73.587058 kcal Electronic energy + Delta-G solvation = -14711.882273 eV Core-core repulsion = 12151.337866 eV Total energy + Delta-G solvation = -2560.544408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.80513 -37.52048 -35.57532 -32.11726 -31.79519 -30.10524 -28.09137 -27.08096 -25.01858 -22.20993 -21.53076 -20.11289 -17.58172 -16.67560 -15.95801 -15.58665 -15.57006 -14.59148 -14.34442 -13.94214 -13.63760 -13.09076 -12.96833 -12.67752 -12.21739 -11.77437 -11.27576 -11.16658 -10.97180 -10.79392 -10.75502 -10.58010 -10.39130 -9.95355 -9.14543 -8.56765 -8.49892 -7.96458 -7.74676 -5.98018 -4.16950 1.77299 1.88034 3.29223 3.36321 3.39074 3.47203 4.20236 4.41629 5.01043 5.16246 5.19406 5.24655 5.28758 5.44902 5.56862 5.78700 5.82782 5.97123 6.22554 6.30247 6.49895 6.61759 6.64731 6.82155 6.91086 7.13893 7.23378 7.70261 7.76386 7.88106 8.19901 8.86294 9.42183 9.60898 11.05917 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.047891 B = 0.006193 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.522706 B = 4520.380897 C = 4739.027657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.226 4.226 5 C -0.085 4.085 6 C -0.142 4.142 7 C -0.014 4.014 8 C -0.113 4.113 9 C 0.237 3.763 10 H 0.057 0.943 11 O -0.561 6.561 12 C -0.573 4.573 13 H 0.057 0.943 14 C 0.079 3.921 15 N -0.859 5.859 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.153 4.153 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.052 0.948 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.342 0.658 30 H 0.260 0.740 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.671 -0.774 -7.881 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.245 4.245 5 C -0.103 4.103 6 C -0.161 4.161 7 C -0.014 4.014 8 C -0.151 4.151 9 C 0.179 3.821 10 H 0.075 0.925 11 O -0.364 6.364 12 C -0.611 4.611 13 H 0.075 0.925 14 C -0.127 4.127 15 N -0.495 5.495 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.172 4.172 21 H 0.070 0.930 22 H 0.113 0.887 23 H 0.071 0.929 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.186 0.814 30 H 0.070 0.930 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.879 -1.419 -7.270 13.999 hybrid contribution 1.028 0.443 -0.243 1.145 sum -10.851 -0.976 -7.513 13.235 Atomic orbital electron populations 1.22964 0.79148 1.03333 1.01066 1.86053 1.20788 1.27494 1.89173 1.18971 0.92299 0.83755 0.97368 1.21026 0.99235 0.92594 1.11631 1.20835 0.94725 0.96516 0.98209 1.20930 0.93256 0.98335 1.03549 1.19988 0.97004 0.91673 0.92759 1.21613 0.88625 1.02069 1.02744 1.19344 0.92446 0.85586 0.84712 0.92547 1.86592 1.76337 1.15206 1.58225 1.21693 0.92064 1.54655 0.92705 0.92505 1.25055 0.98222 0.93855 0.95600 1.70084 1.35202 1.46977 0.97238 0.86670 0.85897 0.78206 0.77583 1.20546 1.21140 1.19808 1.20335 0.90955 0.98609 1.07311 0.93047 0.88710 0.92889 0.86325 0.86448 0.86127 0.91169 0.91720 0.81423 0.92991 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.98 10.50 -19.41 -0.20 -5.18 16 3 C 0.12 2.05 6.69 -39.22 -0.26 1.79 16 4 C -0.23 -3.43 9.04 -39.43 -0.36 -3.79 16 5 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 6 C -0.14 -2.47 9.39 -39.56 -0.37 -2.85 16 7 C -0.01 -0.27 4.97 -104.65 -0.52 -0.79 16 8 C -0.11 -2.32 4.97 -27.88 -0.14 -2.46 16 9 C 0.24 6.03 2.81 -27.88 -0.08 5.95 16 10 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 11 O -0.56 -14.47 12.22 -35.23 -0.43 -14.90 16 12 C -0.57 -15.74 8.76 -34.44 -0.30 -16.04 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 15 N -0.86 -25.71 12.84 55.43 0.71 -25.00 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.15 -2.87 9.64 -39.43 -0.38 -3.25 16 21 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 22 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 23 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 24 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 25 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 27 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 28 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.34 7.74 9.04 45.56 0.41 8.15 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -31.73 271.28 -5.98 -37.70 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -3.21 Total: 6.81 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -1.91 Total: -19.71 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.71 Total: -25.00 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.63 Total: -20.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.73 -5.98 -37.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041205191.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.885 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds