Wall clock time and date at job start Mon Mar 30 2020 02:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.09001 * 109.47100 * 55.00080 * 9 8 7 11 11 O 1.42892 * 109.47079 * 295.00417 * 9 8 7 12 12 C 1.50693 * 109.47130 * 174.99831 * 9 8 7 13 13 H 1.08000 * 120.00377 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00046 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00192 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.46686 * 90.00241 * 16 14 12 18 18 H 1.48497 * 109.47271 * 210.00219 * 16 14 12 19 19 H 1.48492 * 109.47327 * 330.00594 * 16 14 12 20 20 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 21 21 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 22 22 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 24 24 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 26 26 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 27 27 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 28 28 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 29 29 H 0.96702 * 113.99876 * 299.99403 * 11 9 8 30 30 H 0.96997 * 120.00485 * 179.97438 * 15 14 12 31 31 H 1.07997 * 120.02798 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0005 9 6 6.0700 2.6244 1.4430 10 1 5.6813 1.7600 1.9814 11 8 5.6268 3.8227 2.0829 12 6 7.5764 2.5815 1.4448 13 1 8.1165 2.5401 0.5105 14 6 8.2651 2.5962 2.6391 15 7 7.6074 2.6471 3.7769 16 14 10.1324 2.5437 2.6413 17 1 10.6665 3.9288 2.6021 18 1 10.6071 1.8648 3.8738 19 1 10.6080 1.7959 1.4498 20 6 3.4311 1.2848 0.0003 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2128 2.3203 0.0108 25 1 1.3339 4.5114 0.0034 26 1 3.7922 4.6381 0.0022 27 1 5.9714 1.7294 -0.5140 28 1 5.8757 3.5068 -0.5126 29 1 5.9359 4.6337 1.6565 30 1 8.0918 2.6570 4.6171 31 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041205191.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:44 Heat of formation + Delta-G solvation = -95.593207 kcal Electronic energy + Delta-G solvation = -14712.836532 eV Core-core repulsion = 12151.337866 eV Total energy + Delta-G solvation = -2561.498666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03020 -38.90023 -37.37477 -34.24987 -33.33238 -31.36091 -29.81063 -28.09379 -26.85083 -23.64188 -23.12529 -21.63829 -19.21700 -18.36011 -17.16781 -16.85627 -16.66461 -16.60765 -16.25715 -15.53343 -15.09237 -14.73308 -14.40353 -14.08166 -13.53872 -13.12146 -12.99851 -12.84146 -12.70175 -12.40058 -12.22067 -12.04979 -11.89287 -11.59450 -11.09678 -10.70545 -10.30710 -9.55239 -9.05731 -8.11986 -6.38898 0.45845 0.58099 1.41574 1.42356 1.53457 2.39208 2.42634 2.89368 3.13465 3.93010 3.96610 4.21930 4.25224 4.36742 4.41752 4.52206 4.53720 4.62485 4.73147 4.77652 4.86975 5.10350 5.22817 5.39143 5.54276 5.61411 5.71871 5.86426 5.94159 6.09979 6.53042 6.73803 7.34781 7.58868 8.92216 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.047891 B = 0.006193 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.522706 B = 4520.380897 C = 4739.027657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.115 3.885 4 C -0.219 4.219 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.037 4.037 8 C -0.097 4.097 9 C 0.239 3.761 10 H 0.012 0.988 11 O -0.575 6.575 12 C -0.587 4.587 13 H 0.063 0.937 14 C 0.024 3.976 15 N -0.903 5.903 16 Si 0.962 3.038 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.264 1.264 20 C -0.181 4.181 21 H 0.069 0.931 22 H 0.118 0.882 23 H 0.062 0.938 24 H 0.155 0.845 25 H 0.154 0.846 26 H 0.130 0.870 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.356 0.644 30 H 0.261 0.739 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 -0.080 -8.818 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.070 3.930 4 C -0.238 4.238 5 C -0.098 4.098 6 C -0.174 4.174 7 C -0.037 4.037 8 C -0.135 4.135 9 C 0.181 3.819 10 H 0.030 0.970 11 O -0.379 6.379 12 C -0.625 4.625 13 H 0.081 0.919 14 C -0.179 4.179 15 N -0.540 5.540 16 Si 0.786 3.214 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.200 4.200 21 H 0.087 0.913 22 H 0.137 0.863 23 H 0.080 0.920 24 H 0.172 0.828 25 H 0.172 0.828 26 H 0.147 0.853 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.201 0.799 30 H 0.070 0.930 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.902 -0.724 -8.231 15.321 hybrid contribution 1.191 0.186 0.036 1.206 sum -11.712 -0.538 -8.196 14.305 Atomic orbital electron populations 1.23344 0.76387 1.05498 1.02316 1.86030 1.23660 1.27005 1.88937 1.19072 0.91892 0.85124 0.96952 1.21442 1.00983 0.91684 1.09647 1.21261 0.94071 0.98109 0.96323 1.21137 0.94479 0.97941 1.03831 1.19892 0.96077 0.92768 0.94999 1.21297 0.90218 1.02613 0.99335 1.19113 0.91670 0.84155 0.86924 0.96973 1.86519 1.76454 1.15869 1.59083 1.22113 0.93357 1.53971 0.93023 0.91871 1.25952 1.03403 0.93365 0.95138 1.70232 1.37307 1.48520 0.97921 0.85524 0.79576 0.78569 0.77695 1.19573 1.21058 1.18841 1.20397 0.92387 0.98172 1.09047 0.91271 0.86350 0.91962 0.82783 0.82804 0.85250 0.91395 0.90332 0.79937 0.93018 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -10.23 10.50 -92.38 -0.97 -11.20 16 3 C 0.11 3.80 6.69 22.51 0.15 3.95 16 4 C -0.22 -6.04 9.04 22.37 0.20 -5.84 16 5 C -0.08 -2.23 10.04 22.25 0.22 -2.00 16 6 C -0.16 -5.23 9.39 22.28 0.21 -5.02 16 7 C -0.04 -1.44 4.97 -19.88 -0.10 -1.54 16 8 C -0.10 -4.08 4.97 29.85 0.15 -3.93 16 9 C 0.24 12.57 2.81 29.85 0.08 12.65 16 10 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 11 O -0.58 -30.22 12.22 -148.98 -1.82 -32.05 16 12 C -0.59 -32.67 8.76 25.60 0.22 -32.45 16 13 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 14 C 0.02 1.33 5.40 84.66 0.46 1.79 16 15 N -0.90 -55.16 12.84 21.45 0.28 -54.89 16 16 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 C -0.18 -6.96 9.64 22.37 0.22 -6.74 16 21 H 0.07 1.01 7.68 -2.39 -0.02 0.99 16 22 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.06 1.02 7.65 -2.39 -0.02 1.00 16 24 H 0.15 3.08 6.30 -2.91 -0.02 3.06 16 25 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 26 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.07 2.80 8.09 -2.38 -0.02 2.78 16 28 H 0.08 3.01 8.08 -2.39 -0.02 2.99 16 29 H 0.36 16.19 9.04 -74.06 -0.67 15.52 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -69.25 271.28 2.89 -66.35 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.46 Total: 23.70 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 2.93 Total: -37.68 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.28 Total: -54.89 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -2.79 Total: -43.24 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.25 2.89 -66.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041205191.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.241 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds