Wall clock time and date at job start Mon Mar 30 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 H 1.09002 * 109.46708 * 305.62558 * 3 2 1 5 5 C 1.50698 * 109.47412 * 65.62686 * 3 2 1 6 6 H 1.08003 * 119.99601 * 35.15306 * 5 3 2 7 7 C 1.37874 * 120.00258 * 214.87457 * 5 3 2 8 8 N 1.31517 * 119.99679 * 355.01654 * 7 5 3 9 9 Si 1.86800 * 120.00301 * 175.02031 * 7 5 3 10 10 H 1.48495 * 109.47085 * 89.99828 * 9 7 5 11 11 H 1.48503 * 109.47129 * 209.99936 * 9 7 5 12 12 H 1.48500 * 109.46788 * 329.99593 * 9 7 5 13 13 C 1.50703 * 109.47172 * 185.63250 * 3 2 1 14 14 C 1.38245 * 119.92573 * 299.72034 * 13 3 2 15 15 C 1.38245 * 120.14679 * 179.72623 * 14 13 3 16 16 C 1.38564 * 119.99809 * 0.55027 * 15 14 13 17 17 O 1.35988 * 120.07446 * 179.70413 * 16 15 14 18 18 C 1.39159 * 119.85156 * 359.72631 * 16 15 14 19 19 O 1.35998 * 120.06977 * 180.02562 * 18 16 15 20 20 C 1.38242 * 119.92308 * 119.99843 * 13 3 2 21 21 H 1.08996 * 109.46762 * 174.79341 * 1 2 3 22 22 H 1.09009 * 109.46868 * 294.78771 * 1 2 3 23 23 H 1.08999 * 109.47292 * 54.79398 * 1 2 3 24 24 H 1.08995 * 109.47194 * 239.99475 * 2 1 3 25 25 H 1.09005 * 109.47592 * 119.99448 * 2 1 3 26 26 H 0.97002 * 119.99863 * 179.97438 * 8 7 5 27 27 H 1.08004 * 119.92690 * 359.97438 * 14 13 3 28 28 H 1.08000 * 119.99926 * 180.24723 * 15 14 13 29 29 H 0.96700 * 114.00160 * 270.01975 * 17 16 15 30 30 H 0.96702 * 113.99690 * 269.97763 * 19 18 16 31 31 H 1.08000 * 120.00764 * 0.02562 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9845 -0.8354 5 6 1.6547 2.1116 1.2941 6 1 1.6396 1.5431 2.2123 7 6 1.3270 3.4508 1.3070 8 7 1.4449 4.1671 0.2103 9 14 0.7158 4.2478 2.8820 10 1 1.8714 4.7780 3.6492 11 1 -0.2086 5.3608 2.5472 12 1 -0.0014 3.2382 3.7015 13 6 3.5406 1.4448 -0.1395 14 6 4.3226 0.8181 0.8128 15 6 5.6993 0.8125 0.6864 16 6 6.2987 1.4458 -0.3905 17 8 7.6530 1.4464 -0.5131 18 6 5.5117 2.0815 -1.3460 19 8 6.0953 2.7040 -2.4050 20 6 4.1321 2.0785 -1.2163 21 1 -0.3633 -1.0234 -0.0933 22 1 -0.3633 0.4309 0.9331 23 1 -0.3634 0.5925 -0.8397 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.2140 5.1092 0.2193 27 1 3.8569 0.3283 1.6552 28 1 6.3078 0.3188 1.4296 29 1 8.0865 2.1967 -0.0839 30 1 6.3061 3.6344 -2.2469 31 1 3.5191 2.5716 -1.9562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084351177.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:31 Heat of formation + Delta-G solvation = -81.745464 kcal Electronic energy + Delta-G solvation = -15067.625871 eV Core-core repulsion = 12506.727689 eV Total energy + Delta-G solvation = -2560.898183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49085 -36.73640 -36.38051 -34.09299 -31.86368 -29.72902 -28.79458 -26.15505 -23.75520 -22.10447 -21.38561 -19.60783 -18.18460 -17.16328 -16.34289 -15.35324 -15.17019 -14.59470 -14.23894 -13.70230 -13.33681 -13.01834 -12.68133 -12.13271 -11.74789 -11.43484 -11.26132 -11.11087 -10.97445 -10.83147 -10.47379 -10.17733 -10.09231 -9.53610 -9.34821 -9.03579 -8.56304 -8.06051 -7.52364 -6.12698 -4.15518 1.94389 2.04822 3.23568 3.31201 3.34033 4.27538 4.39019 4.66926 4.79715 5.20420 5.57114 5.92937 6.05706 6.12775 6.18636 6.31780 6.35518 6.55343 6.60887 6.75068 6.91131 7.01854 7.06452 7.18485 7.28769 7.39759 7.59692 7.72488 7.83610 7.91594 8.27215 8.34530 8.91206 9.47536 10.95534 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.009389 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.450190 B = 2981.613706 C = 3337.718782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C 0.062 3.938 4 H 0.065 0.935 5 C -0.502 4.502 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 C -0.009 4.009 14 C -0.109 4.109 15 C -0.138 4.138 16 C 0.037 3.963 17 O -0.495 6.495 18 C 0.072 3.928 19 O -0.496 6.496 20 C -0.128 4.128 21 H 0.029 0.971 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.262 0.738 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.373 0.627 30 H 0.378 0.622 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -2.564 0.139 5.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.043 3.957 4 H 0.084 0.916 5 C -0.539 4.539 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.010 4.010 14 C -0.127 4.127 15 C -0.156 4.156 16 C -0.007 4.007 17 O -0.303 6.303 18 C 0.027 3.973 19 O -0.305 6.305 20 C -0.147 4.147 21 H 0.048 0.952 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.227 0.773 30 H 0.232 0.768 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.975 -3.455 -0.529 6.080 hybrid contribution -0.009 1.668 1.378 2.163 sum 4.966 -1.787 0.849 5.346 Atomic orbital electron populations 1.21586 0.96570 0.98547 1.02367 1.21560 0.95531 0.98427 0.98980 1.18158 0.85878 0.92008 0.99637 0.91636 1.20977 1.45273 0.94340 0.93354 0.92426 1.24996 0.95124 0.97432 0.96125 1.69935 1.47655 1.07565 1.27103 0.86637 0.78836 0.79159 0.83689 1.20725 1.21171 1.19721 1.20769 0.99538 0.90491 0.90154 1.20905 0.91920 1.00392 0.99466 1.21186 0.95527 1.01762 0.97160 1.18582 0.82468 1.04112 0.95540 1.84892 1.16273 1.50138 1.79019 1.18829 0.91016 0.98564 0.88898 1.84854 1.81475 1.27777 1.36383 1.21319 0.92484 1.01647 0.99254 0.95201 0.92038 0.93567 0.94784 0.93520 0.92847 0.85997 0.86402 0.77344 0.76778 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.65 37.16 0.36 -2.16 16 2 C -0.11 -2.16 5.12 -26.73 -0.14 -2.30 16 3 C 0.06 1.44 2.03 -92.92 -0.19 1.25 16 4 H 0.07 1.70 7.11 -51.93 -0.37 1.33 16 5 C -0.50 -12.71 7.02 -34.44 -0.24 -12.95 16 6 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 7 C 0.07 1.73 5.45 -17.82 -0.10 1.63 16 8 N -0.89 -24.20 12.84 55.43 0.71 -23.49 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 C -0.01 -0.19 4.77 -104.62 -0.50 -0.69 16 14 C -0.11 -2.19 8.86 -39.58 -0.35 -2.54 16 15 C -0.14 -2.54 9.98 -39.46 -0.39 -2.93 16 16 C 0.04 0.71 6.72 -39.12 -0.26 0.44 16 17 O -0.50 -8.17 13.29 -34.20 -0.45 -8.62 16 18 C 0.07 1.42 6.72 -39.12 -0.26 1.16 16 19 O -0.50 -8.82 13.29 -34.24 -0.46 -9.28 16 20 C -0.13 -2.77 9.60 -39.46 -0.38 -3.15 16 21 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.06 1.22 7.57 -51.92 -0.39 0.83 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.91 7.60 -51.93 -0.39 0.51 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.12 2.34 7.65 -52.48 -0.40 1.94 16 28 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.37 4.25 9.06 45.56 0.41 4.66 16 30 H 0.38 4.87 9.06 45.56 0.41 5.29 16 31 H 0.13 2.77 7.94 -52.49 -0.42 2.35 16 LS Contribution 270.81 15.07 4.08 4.08 Total: -1.00 -29.53 270.81 -5.98 -35.50 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -2.39 Total: 8.66 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.45 Total: -22.25 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.71 Total: -23.49 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.91 Total: -17.90 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.53 -5.98 -35.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351177.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.242 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds