Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86804 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47083 * 271.45087 * 3 2 1 5 5 H 1.48498 * 109.46855 * 31.45221 * 3 2 1 6 6 H 1.48498 * 109.47234 * 151.45077 * 3 2 1 7 7 C 1.39703 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99294 * 344.03255 * 7 2 1 9 9 C 1.41597 * 120.00019 * 164.03292 * 7 2 1 10 10 C 1.41882 * 126.55731 * 341.56273 * 9 7 2 11 11 N 1.30315 * 108.04704 * 180.02562 * 10 9 7 12 12 N 1.39875 * 109.23079 * 359.97438 * 11 10 9 13 13 C 1.46507 * 125.67684 * 179.73238 * 12 11 10 14 14 H 1.09000 * 110.01193 * 25.08884 * 13 12 11 15 15 C 1.53874 * 110.03210 * 146.48134 * 13 12 11 16 16 C 1.54272 * 106.59688 * 119.28490 * 15 13 12 17 17 C 1.54892 * 104.19434 * 23.61121 * 16 15 13 18 18 C 1.54262 * 110.03049 * 263.65140 * 13 12 11 19 19 H 1.08999 * 110.48983 * 335.77824 * 18 13 12 20 20 O 1.42898 * 110.48754 * 98.43051 * 18 13 12 21 21 C 1.34505 * 108.64968 * 0.02562 * 12 11 10 22 22 H 0.97002 * 119.99756 * 0.02562 * 1 2 3 23 23 H 1.08009 * 125.97608 * 0.02562 * 10 9 7 24 24 H 1.08993 * 110.02976 * 238.57320 * 15 13 12 25 25 H 1.08995 * 110.03006 * 359.95368 * 15 13 12 26 26 H 1.09000 * 110.48152 * 142.28665 * 16 15 13 27 27 H 1.08993 * 110.48644 * 264.80126 * 16 15 13 28 28 H 1.09005 * 110.75445 * 80.37115 * 17 16 15 29 29 H 1.08997 * 110.75160 * 203.55479 * 17 16 15 30 30 H 0.96706 * 113.99976 * 180.02562 * 20 18 13 31 31 H 1.07996 * 126.40765 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4611 2.0641 -1.3997 5 1 1.4575 2.6436 0.7305 6 1 3.5569 1.4315 0.6691 7 6 2.0088 -1.2099 0.0005 8 1 1.4999 -2.1269 0.2583 9 6 3.3838 -1.2337 -0.3368 10 6 4.1005 -0.2269 -1.0338 11 7 5.3380 -0.6185 -1.1487 12 7 5.4827 -1.8717 -0.5444 13 6 6.7239 -2.6465 -0.4706 14 1 7.5841 -1.9801 -0.5350 15 6 6.7710 -3.4423 0.8456 16 6 6.8435 -4.9334 0.4566 17 6 7.4373 -4.9243 -0.9739 18 6 6.7694 -3.6816 -1.6134 19 1 5.7612 -3.9218 -1.9509 20 8 7.5588 -3.1930 -2.6997 21 6 4.2912 -2.2499 -0.0479 22 1 -0.4850 0.8401 -0.0004 23 1 3.6918 0.7017 -1.4044 24 1 7.6545 -3.1627 1.4195 25 1 5.8709 -3.2513 1.4297 26 1 7.4997 -5.4740 1.1386 27 1 5.8476 -5.3762 0.4556 28 1 8.5206 -4.8071 -0.9418 29 1 7.1644 -5.8326 -1.5112 30 1 7.6212 -3.8041 -3.4466 31 1 4.0781 -3.1697 0.4764 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214638387.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = 19.838105 kcal Electronic energy + Delta-G solvation = -15156.901959 eV Core-core repulsion = 12632.701521 eV Total energy + Delta-G solvation = -2524.200437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99784 -38.17222 -35.14476 -33.28252 -31.35606 -29.41616 -27.71591 -27.22585 -24.34799 -21.15403 -20.92377 -20.10935 -18.65586 -17.76325 -16.99260 -15.85249 -15.02247 -14.70272 -14.30039 -13.93383 -13.58954 -13.13466 -12.88470 -12.42971 -12.34258 -11.61521 -11.48372 -11.18066 -10.97035 -10.82764 -10.72122 -10.65444 -10.42604 -9.89697 -9.78841 -9.12386 -9.04756 -8.10322 -7.36541 -6.56341 -4.01258 2.94128 3.20406 3.33562 3.42193 3.52847 4.01904 4.14893 4.19607 4.57170 4.72381 4.96952 5.29367 5.38329 5.43408 5.44124 5.50232 5.62101 5.76280 5.87268 5.98006 6.08911 6.18038 6.20573 6.35773 6.96490 7.25447 7.43609 7.69279 7.78399 8.36906 8.56625 8.85458 8.99937 9.22503 10.51180 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046707 B = 0.007801 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.340371 B = 3588.192363 C = 3813.394278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.083 3.917 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.251 1.251 7 C -0.442 4.442 8 H 0.083 0.917 9 C -0.026 4.026 10 C -0.031 4.031 11 N -0.303 5.303 12 N -0.372 5.372 13 C 0.178 3.822 14 H 0.098 0.902 15 C -0.134 4.134 16 C -0.120 4.120 17 C -0.155 4.155 18 C 0.087 3.913 19 H 0.071 0.929 20 O -0.558 6.558 21 C -0.110 4.110 22 H 0.277 0.723 23 H 0.159 0.841 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.374 0.626 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.217 -8.078 -0.350 14.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.475 4.475 8 H 0.101 0.899 9 C -0.036 4.036 10 C -0.217 4.217 11 N -0.126 5.126 12 N -0.161 5.161 13 C 0.073 3.927 14 H 0.117 0.883 15 C -0.173 4.173 16 C -0.158 4.158 17 C -0.193 4.193 18 C 0.027 3.973 19 H 0.088 0.912 20 O -0.362 6.362 21 C -0.250 4.250 22 H 0.087 0.913 23 H 0.175 0.825 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.221 0.779 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.229 -7.225 -0.337 15.077 hybrid contribution -0.692 0.077 -0.115 0.706 sum 12.537 -7.148 -0.452 14.438 Atomic orbital electron populations 1.69744 1.07443 1.28962 1.41131 1.25743 0.94581 1.00486 0.92195 0.86676 0.80791 0.81298 0.78626 1.19940 1.21975 1.17510 1.18511 0.90911 0.95469 1.42618 0.89935 1.18293 0.94455 0.92160 0.98645 1.23833 0.92220 1.01287 1.04342 1.76498 1.20172 0.96311 1.19613 1.47542 1.06857 1.14296 1.47385 1.21302 0.86396 0.91715 0.93262 0.88348 1.22501 1.04074 0.94559 0.96159 1.22253 1.01507 0.96077 0.95948 1.23168 1.01055 0.98185 0.96936 1.23219 0.94203 0.92557 0.87351 0.91154 1.86557 1.73131 1.47572 1.28964 1.22099 0.85091 1.04049 1.13776 0.91323 0.82469 0.90453 0.89248 0.91065 0.90947 0.90435 0.91125 0.77933 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.01 13.94 55.54 0.77 -23.24 16 2 C 0.08 2.30 5.50 -17.35 -0.10 2.21 16 3 Si 0.90 21.70 24.51 -169.99 -4.17 17.54 16 4 H -0.27 -6.36 6.68 56.52 0.38 -5.98 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.25 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.44 -12.54 9.91 -37.75 -0.37 -12.92 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 C -0.03 -0.68 5.49 -106.84 -0.59 -1.26 16 10 C -0.03 -0.81 9.27 -16.80 -0.16 -0.96 16 11 N -0.30 -7.58 12.47 30.97 0.39 -7.19 16 12 N -0.37 -8.16 3.49 -52.83 -0.18 -8.35 16 13 C 0.18 3.02 3.74 -66.81 -0.25 2.77 16 14 H 0.10 1.73 8.07 -51.93 -0.42 1.31 16 15 C -0.13 -1.80 6.30 -25.61 -0.16 -1.96 16 16 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 17 C -0.16 -1.66 6.62 -24.73 -0.16 -1.82 16 18 C 0.09 1.28 3.94 -25.07 -0.10 1.18 16 19 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 20 O -0.56 -8.21 13.37 -35.23 -0.47 -8.68 16 21 C -0.11 -2.55 10.21 -16.00 -0.16 -2.72 16 22 H 0.28 7.22 8.30 -40.82 -0.34 6.88 16 23 H 0.16 3.97 4.22 -52.48 -0.22 3.74 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.33 6.25 -51.93 -0.32 1.01 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.37 3.63 9.12 45.56 0.42 4.05 16 31 H 0.15 3.04 7.38 -52.49 -0.39 2.65 16 LS Contribution 256.06 15.07 3.86 3.86 Total: -1.00 -32.17 256.06 -5.11 -37.28 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.08 Total: 5.74 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.22 Total: -16.95 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.98 Total: -38.78 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.47 Total: -8.68 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.17 Total: 17.54 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.17 -5.11 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214638387.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.118 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds