Wall clock time and date at job start Mon Mar 30 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00413 * 2 1 4 4 H 1.48492 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46861 * 300.00312 * 3 2 1 6 6 H 1.48501 * 109.46971 * 59.99690 * 3 2 1 7 7 C 1.37879 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00075 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.37511 * 126.47858 * 100.00142 * 10 9 7 12 12 C 1.34420 * 106.91813 * 180.02562 * 11 10 9 13 13 C 1.50702 * 125.87075 * 179.97438 * 12 11 10 14 14 C 1.53785 * 113.61241 * 14.12576 * 13 12 11 15 15 C 1.53945 * 87.02146 * 220.05286 * 14 13 12 16 16 C 1.53783 * 87.11262 * 25.36671 * 15 14 13 17 17 N 1.34367 * 108.26713 * 359.97438 * 12 11 10 18 18 C 1.31021 * 109.29921 * 0.02562 * 17 12 11 19 19 O 1.35499 * 125.76311 * 180.26272 * 18 17 12 20 20 H 0.97000 * 119.99778 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47035 * 59.99872 * 9 7 2 22 22 H 1.09002 * 109.47140 * 300.00132 * 9 7 2 23 23 H 1.07998 * 126.54575 * 0.02562 * 11 10 9 24 24 H 1.08994 * 112.85203 * 145.32743 * 13 12 11 25 25 H 1.08996 * 113.61730 * 334.57697 * 14 13 12 26 26 H 1.09004 * 113.60808 * 105.47111 * 14 13 12 27 27 H 1.08997 * 113.53957 * 270.81389 * 15 14 13 28 28 H 1.09005 * 113.74488 * 139.94917 * 15 14 13 29 29 H 1.09007 * 113.61111 * 220.09341 * 16 15 14 30 30 H 1.08993 * 113.69425 * 89.19619 * 16 15 14 31 31 H 0.96702 * 114.00068 * 269.68878 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.5875 -4.3584 1.0913 12 6 3.4708 -5.2702 0.6493 13 6 4.1642 -6.3090 1.4925 14 6 3.5370 -6.4912 2.8848 15 6 4.9727 -6.6100 3.4276 16 6 5.4183 -5.7828 2.2103 17 7 3.6292 -5.0963 -0.6736 18 6 2.8732 -4.1037 -1.0735 19 8 2.7720 -3.6479 -2.3455 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.2452 -4.2351 2.1081 24 1 4.3265 -7.2464 0.9606 25 1 3.0061 -5.6094 3.2433 26 1 2.9542 -7.4070 2.9846 27 1 5.3556 -7.6304 3.4260 28 1 5.1252 -6.1022 4.3801 29 1 6.3524 -6.1275 1.7664 30 1 5.4035 -4.7067 2.3827 31 1 3.4019 -2.9474 -2.5636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259544225.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:17 Heat of formation + Delta-G solvation = 29.699734 kcal Electronic energy + Delta-G solvation = -14883.329793 eV Core-core repulsion = 12359.556988 eV Total energy + Delta-G solvation = -2523.772805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.29489 -38.28876 -36.34104 -34.02360 -32.07830 -28.56831 -27.55318 -25.42238 -24.71741 -23.13778 -20.72791 -20.18642 -18.76266 -17.47536 -16.60739 -16.14971 -15.19620 -14.81319 -14.61634 -14.16083 -13.58962 -13.22714 -12.54778 -12.20112 -12.16771 -11.93262 -11.68106 -11.19675 -11.06388 -10.96522 -10.58024 -10.36548 -10.30787 -10.10989 -9.89605 -9.22638 -8.75479 -8.58592 -7.48681 -6.38118 -4.47371 2.71096 3.11914 3.20463 3.24534 3.44917 3.71034 4.17715 4.56998 4.88169 4.90874 4.97085 5.05526 5.24285 5.67664 5.69313 5.86486 5.90442 6.01671 6.02926 6.14896 6.27742 6.42704 6.48574 6.75632 6.91435 7.11334 7.45000 7.48697 7.63451 7.76188 8.39948 8.62651 8.75279 9.20933 10.70287 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.007305 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.066025 B = 3832.189103 C = 4166.774504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.230 3.770 10 N -0.430 5.430 11 C -0.036 4.036 12 C -0.002 4.002 13 C -0.017 4.017 14 C -0.134 4.134 15 C -0.143 4.143 16 C -0.129 4.129 17 N -0.502 5.502 18 C 0.369 3.631 19 O -0.445 6.445 20 H 0.269 0.731 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.167 0.833 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.421 -7.806 4.606 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.111 3.889 10 N -0.119 5.119 11 C -0.172 4.172 12 C -0.132 4.132 13 C -0.037 4.037 14 C -0.172 4.172 15 C -0.180 4.180 16 C -0.167 4.167 17 N -0.233 5.233 18 C 0.069 3.931 19 O -0.245 6.245 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.184 0.816 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.157 -8.348 3.892 11.079 hybrid contribution 0.068 2.003 0.382 2.040 sum 6.225 -6.346 4.274 9.864 Atomic orbital electron populations 1.69931 1.06134 1.27749 1.48587 1.24953 0.94971 0.99595 0.94146 0.86294 0.79945 0.82419 0.77999 1.19539 1.20501 1.20543 1.21275 0.93560 0.89699 1.53775 0.91798 1.19790 0.87346 0.81802 0.99950 1.46610 1.33252 1.25624 1.06428 1.22208 1.04135 0.98086 0.92814 1.20041 1.02250 1.00782 0.90112 1.20622 0.94918 0.95954 0.92160 1.23006 0.96358 1.02110 0.95701 1.22837 0.96969 1.00217 0.98007 1.22941 0.97483 1.00274 0.96040 1.70189 1.22988 1.18082 1.12012 1.20145 0.96382 0.94423 0.82147 1.84769 1.61504 1.57685 1.20562 0.92152 0.93083 0.93256 0.81577 0.88795 0.89762 0.91502 0.90465 0.91598 0.91750 0.90027 0.74903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.39 9.37 -34.44 -0.32 -14.71 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.23 5.74 5.89 -5.19 -0.03 5.71 16 10 N -0.43 -9.74 2.78 -119.81 -0.33 -10.07 16 11 C -0.04 -0.72 10.74 -16.35 -0.18 -0.89 16 12 C 0.00 -0.03 6.48 -82.83 -0.54 -0.57 16 13 C -0.02 -0.25 4.29 -90.95 -0.39 -0.64 16 14 C -0.13 -1.63 7.46 -25.83 -0.19 -1.82 16 15 C -0.14 -1.54 8.09 -25.83 -0.21 -1.75 16 16 C -0.13 -1.70 7.63 -25.92 -0.20 -1.90 16 17 N -0.50 -10.91 11.28 -10.93 -0.12 -11.04 16 18 C 0.37 8.26 9.05 -89.17 -0.81 7.45 16 19 O -0.45 -9.14 13.57 -18.19 -0.25 -9.38 16 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 21 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 22 H 0.05 1.25 8.12 -51.93 -0.42 0.83 16 23 H 0.17 2.86 6.79 -52.49 -0.36 2.50 16 24 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.08 1.04 6.42 -51.93 -0.33 0.71 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 31 H 0.40 6.40 9.06 45.56 0.41 6.82 16 LS Contribution 269.70 15.07 4.06 4.06 Total: -1.00 -29.85 269.70 -7.08 -36.93 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.20 Total: 5.37 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.96 Total: -7.42 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.28 Total: -44.88 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.25 Total: -9.38 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.85 -7.08 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259544225.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.632 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds