Wall clock time and date at job start Mon Mar 30 2020 03:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00413 * 2 1 4 4 H 1.48492 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46861 * 300.00312 * 3 2 1 6 6 H 1.48501 * 109.46971 * 59.99690 * 3 2 1 7 7 C 1.37879 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00075 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.37511 * 126.47858 * 100.00142 * 10 9 7 12 12 C 1.34420 * 106.91813 * 180.02562 * 11 10 9 13 13 C 1.50702 * 125.87075 * 179.97438 * 12 11 10 14 14 C 1.53785 * 113.61241 * 14.12576 * 13 12 11 15 15 C 1.53945 * 87.02146 * 220.05286 * 14 13 12 16 16 C 1.53783 * 87.11262 * 25.36671 * 15 14 13 17 17 N 1.34367 * 108.26713 * 359.97438 * 12 11 10 18 18 C 1.31021 * 109.29921 * 0.02562 * 17 12 11 19 19 O 1.35499 * 125.76311 * 180.26272 * 18 17 12 20 20 H 0.97000 * 119.99778 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47035 * 59.99872 * 9 7 2 22 22 H 1.09002 * 109.47140 * 300.00132 * 9 7 2 23 23 H 1.07998 * 126.54575 * 0.02562 * 11 10 9 24 24 H 1.08994 * 112.85203 * 145.32743 * 13 12 11 25 25 H 1.08996 * 113.61730 * 334.57697 * 14 13 12 26 26 H 1.09004 * 113.60808 * 105.47111 * 14 13 12 27 27 H 1.08997 * 113.53957 * 270.81389 * 15 14 13 28 28 H 1.09005 * 113.74488 * 139.94917 * 15 14 13 29 29 H 1.09007 * 113.61111 * 220.09341 * 16 15 14 30 30 H 1.08993 * 113.69425 * 89.19619 * 16 15 14 31 31 H 0.96702 * 114.00068 * 269.68878 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.5875 -4.3584 1.0913 12 6 3.4708 -5.2702 0.6493 13 6 4.1642 -6.3090 1.4925 14 6 3.5370 -6.4912 2.8848 15 6 4.9727 -6.6100 3.4276 16 6 5.4183 -5.7828 2.2103 17 7 3.6292 -5.0963 -0.6736 18 6 2.8732 -4.1037 -1.0735 19 8 2.7720 -3.6479 -2.3455 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.2452 -4.2351 2.1081 24 1 4.3265 -7.2464 0.9606 25 1 3.0061 -5.6094 3.2433 26 1 2.9542 -7.4070 2.9846 27 1 5.3556 -7.6304 3.4260 28 1 5.1252 -6.1022 4.3801 29 1 6.3524 -6.1275 1.7664 30 1 5.4035 -4.7067 2.3827 31 1 3.4019 -2.9474 -2.5636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259544225.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:17 Heat of formation + Delta-G solvation = 9.178760 kcal Electronic energy + Delta-G solvation = -14884.219649 eV Core-core repulsion = 12359.556988 eV Total energy + Delta-G solvation = -2524.662661 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.92065 -39.40542 -37.92981 -35.93740 -33.95917 -30.06968 -29.41738 -26.48241 -26.09055 -24.96204 -22.29542 -21.64188 -20.04026 -19.18990 -18.55402 -17.72336 -16.65297 -16.36096 -16.04103 -15.62505 -15.14593 -14.93059 -14.23664 -13.82233 -13.50915 -13.22956 -12.98309 -12.86902 -12.75243 -12.67765 -12.30682 -11.88133 -11.59638 -11.21888 -11.14349 -10.91784 -10.72827 -10.35926 -9.07174 -8.40497 -6.58296 1.05768 1.36018 1.38358 1.50217 1.85705 2.03944 2.30180 2.92476 3.05169 3.78710 3.87970 3.95663 4.14352 4.26473 4.34313 4.58482 4.67583 4.84805 4.94738 4.99352 5.03589 5.19397 5.21246 5.37197 5.46231 5.54478 5.71500 5.73889 5.77281 5.98595 6.48241 6.84688 7.10566 7.15596 8.68271 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.007305 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.066025 B = 3832.189103 C = 4166.774504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.443 5.443 11 C -0.049 4.049 12 C 0.003 3.997 13 C -0.030 4.030 14 C -0.130 4.130 15 C -0.125 4.125 16 C -0.131 4.131 17 N -0.517 5.517 18 C 0.350 3.650 19 O -0.453 6.453 20 H 0.274 0.726 21 H 0.027 0.973 22 H 0.040 0.960 23 H 0.189 0.811 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 -8.011 5.805 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.076 0.924 9 C 0.126 3.874 10 N -0.134 5.134 11 C -0.183 4.183 12 C -0.126 4.126 13 C -0.049 4.049 14 C -0.168 4.168 15 C -0.162 4.162 16 C -0.169 4.169 17 N -0.248 5.248 18 C 0.050 3.950 19 O -0.255 6.255 20 H 0.083 0.917 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.206 0.794 24 H 0.117 0.883 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.332 -8.571 5.095 12.377 hybrid contribution -0.281 2.001 -0.018 2.020 sum 7.050 -6.571 5.077 10.893 Atomic orbital electron populations 1.70022 1.07571 1.28947 1.49080 1.25796 0.95753 1.02959 0.93391 0.85246 0.78556 0.78019 0.78305 1.19259 1.19809 1.19779 1.21427 0.93307 0.90645 1.54148 0.92437 1.19374 0.87375 0.82433 0.98203 1.46560 1.33484 1.25765 1.07553 1.22714 1.04399 0.97920 0.93242 1.20790 1.01403 1.00986 0.89470 1.20930 0.96231 0.94955 0.92789 1.23017 0.97528 1.02699 0.93533 1.22791 0.95197 1.00903 0.97353 1.22927 0.96921 0.99849 0.97190 1.70249 1.23155 1.17927 1.13478 1.20450 0.96921 0.95033 0.82554 1.84714 1.62358 1.58423 1.20045 0.91700 0.95534 0.94204 0.79373 0.88330 0.90097 0.90038 0.88511 0.90287 0.91095 0.91481 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.96 13.29 21.45 0.28 -50.67 16 2 C 0.02 1.18 5.46 84.66 0.46 1.65 16 3 Si 0.98 41.29 29.54 68.60 2.03 43.31 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.56 -29.68 9.37 25.60 0.24 -29.44 16 8 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.25 12.58 5.89 85.63 0.50 13.08 16 10 N -0.44 -20.34 2.78 -644.02 -1.79 -22.13 16 11 C -0.05 -1.91 10.74 82.93 0.89 -1.02 16 12 C 0.00 0.13 6.48 41.30 0.27 0.39 16 13 C -0.03 -0.83 4.29 -11.01 -0.05 -0.87 16 14 C -0.13 -2.82 7.46 31.18 0.23 -2.58 16 15 C -0.13 -2.27 8.09 31.18 0.25 -2.02 16 16 C -0.13 -3.16 7.63 31.12 0.24 -2.92 16 17 N -0.52 -22.43 11.28 -302.08 -3.41 -25.83 16 18 C 0.35 15.84 9.05 179.84 1.63 17.47 16 19 O -0.45 -18.90 13.57 -88.00 -1.19 -20.09 16 20 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 21 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.04 2.08 8.12 -2.39 -0.02 2.06 16 23 H 0.19 6.32 6.79 -2.91 -0.02 6.30 16 24 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.08 1.81 6.42 -2.39 -0.02 1.80 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 31 H 0.41 13.52 9.06 -74.06 -0.67 12.85 16 Total: -1.00 -63.06 269.70 1.05 -62.01 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.47 Total: 19.67 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.67 Total: -6.27 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -4.91 Total: -98.63 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.19 Total: -20.09 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -63.06 1.05 -62.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259544225.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.190 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds