Wall clock time and date at job start Mon Mar 30 2020 02:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 117.00158 * 2 1 4 4 C 1.38736 * 120.05708 * 180.02562 * 3 2 1 5 5 C 1.38151 * 119.94203 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05492 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94193 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47152 * 25.00125 * 7 6 5 9 9 C 1.50699 * 109.47227 * 265.00241 * 7 6 5 10 10 H 1.07999 * 120.00019 * 359.97438 * 9 7 6 11 11 C 1.37877 * 120.00129 * 180.02562 * 9 7 6 12 12 N 1.31519 * 119.99723 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99900 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47147 * 90.00197 * 13 11 9 15 15 H 1.48499 * 109.46797 * 209.99607 * 13 11 9 16 16 H 1.48500 * 109.47032 * 329.99738 * 13 11 9 17 17 O 1.42898 * 109.47171 * 145.00341 * 7 6 5 18 18 C 1.42902 * 113.99874 * 270.00168 * 17 7 6 19 19 C 1.38267 * 120.11330 * 0.27808 * 6 5 4 20 20 C 1.38141 * 120.05668 * 359.44681 * 19 6 5 21 21 H 1.08995 * 109.47113 * 60.00051 * 1 2 3 22 22 H 1.08996 * 109.46759 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47028 * 300.00135 * 1 2 3 24 24 H 1.07991 * 120.02607 * 359.95415 * 4 3 2 25 25 H 1.07995 * 119.96558 * 180.02562 * 5 4 3 26 26 H 0.97003 * 119.99231 * 179.97438 * 12 11 9 27 27 H 1.08997 * 109.47374 * 59.99540 * 18 17 7 28 28 H 1.09001 * 109.47118 * 179.97438 * 18 17 7 29 29 H 1.09002 * 109.47082 * 300.00110 * 18 17 7 30 30 H 1.07999 * 119.97022 * 179.70489 * 19 6 5 31 31 H 1.07998 * 120.03168 * 180.27847 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0016 8 1 4.9811 4.9193 -0.4355 9 6 4.1033 5.5226 1.4137 10 1 3.7203 4.9301 2.2314 11 6 4.6986 6.7407 1.6647 12 7 5.1646 7.4624 0.6688 13 14 4.8432 7.3658 3.4190 14 1 6.1244 6.8987 4.0069 15 1 4.8104 8.8504 3.4197 16 1 3.7098 6.8452 4.2250 17 8 3.2193 5.9438 -0.7748 18 6 3.5749 5.9800 -2.1584 19 6 1.9211 3.6047 0.0042 20 6 1.2915 2.3751 -0.0010 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0209 0.3799 -0.0002 25 1 5.1345 2.5750 -0.0019 26 1 5.5830 8.3195 0.8454 27 1 3.4268 4.9935 -2.5976 28 1 2.9476 6.7057 -2.6759 29 1 4.6216 6.2681 -2.2571 30 1 1.3343 4.5113 0.0086 31 1 0.2129 2.3201 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085260.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:18 Heat of formation + Delta-G solvation = -79.150727 kcal Electronic energy + Delta-G solvation = -14945.664132 eV Core-core repulsion = 12384.878466 eV Total energy + Delta-G solvation = -2560.785666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99407 -39.09275 -37.40190 -34.61668 -32.03506 -31.85734 -29.03389 -27.76128 -26.85743 -24.68534 -23.30965 -21.78556 -19.01129 -18.73737 -17.30125 -17.11867 -16.55686 -16.39979 -15.96948 -15.43952 -15.39915 -14.50291 -14.45154 -14.12260 -13.74951 -13.59358 -13.08323 -12.82724 -12.73215 -12.47850 -12.04838 -11.90889 -11.73680 -11.59229 -11.28844 -10.64330 -9.99654 -9.84781 -8.93880 -8.15459 -6.36090 0.49066 0.60022 1.41355 1.42716 1.53710 2.40263 2.44785 2.91809 3.04506 3.81804 3.99172 4.04092 4.30478 4.40092 4.43784 4.58999 4.63815 4.66565 4.73177 4.78462 4.86773 4.92440 5.05328 5.23051 5.40251 5.53464 5.72498 5.88116 5.91531 6.15605 6.54261 6.68505 7.08904 7.38024 8.90444 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.034393 B = 0.007738 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.917214 B = 3617.862730 C = 3995.676055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.105 3.895 4 C -0.155 4.155 5 C -0.091 4.091 6 C -0.129 4.129 7 C 0.255 3.745 8 H -0.001 1.001 9 C -0.542 4.542 10 H 0.056 0.944 11 C 0.028 3.972 12 N -0.897 5.897 13 Si 0.962 3.038 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.270 1.270 17 O -0.394 6.394 18 C 0.042 3.958 19 C -0.075 4.075 20 C -0.205 4.205 21 H 0.061 0.939 22 H 0.123 0.877 23 H 0.059 0.941 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.264 0.736 27 H 0.029 0.971 28 H 0.081 0.919 29 H 0.018 0.982 30 H 0.114 0.886 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 -10.991 -2.292 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.060 3.940 4 C -0.174 4.174 5 C -0.109 4.109 6 C -0.130 4.130 7 C 0.199 3.801 8 H 0.016 0.984 9 C -0.579 4.579 10 H 0.074 0.926 11 C -0.174 4.174 12 N -0.534 5.534 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.194 1.194 17 O -0.313 6.313 18 C -0.055 4.055 19 C -0.093 4.093 20 C -0.224 4.224 21 H 0.080 0.920 22 H 0.142 0.858 23 H 0.077 0.923 24 H 0.163 0.837 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.037 0.963 30 H 0.132 0.868 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.046 -10.915 -2.270 13.189 hybrid contribution 0.291 0.756 0.543 0.975 sum -6.756 -10.159 -1.726 12.322 Atomic orbital electron populations 1.23317 0.76750 1.05500 1.02021 1.86003 1.23258 1.26312 1.89105 1.19016 0.92419 0.84433 0.98092 1.20513 0.91858 0.98214 1.06806 1.20932 1.00105 0.91147 0.98692 1.20876 0.94975 0.96633 1.00501 1.18446 0.88007 0.82838 0.90765 0.98357 1.21323 1.39639 1.05347 0.91564 0.92556 1.25865 0.93737 0.96515 1.01309 1.70112 1.37744 1.12682 1.32868 0.85520 0.78823 0.77430 0.79614 1.19423 1.20515 1.19407 1.88031 1.61131 1.63711 1.18386 1.22495 0.98977 0.99464 0.84538 1.20783 0.94093 0.97284 0.97145 1.21372 1.00788 0.91468 1.08736 0.91997 0.85843 0.92251 0.83675 0.85452 0.92707 0.95264 0.90054 0.96339 0.86757 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.25 10.50 -92.38 -0.97 -10.22 16 3 C 0.11 3.45 6.69 22.51 0.15 3.60 16 4 C -0.16 -5.29 9.99 22.37 0.22 -5.07 16 5 C -0.09 -3.58 9.67 22.25 0.22 -3.36 16 6 C -0.13 -5.84 4.90 -19.85 -0.10 -5.93 16 7 C 0.26 13.56 2.17 29.10 0.06 13.63 16 8 H 0.00 -0.07 7.69 -2.39 -0.02 -0.09 16 9 C -0.54 -31.05 8.78 25.60 0.22 -30.82 16 10 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 11 C 0.03 1.60 5.40 84.65 0.46 2.06 16 12 N -0.90 -52.89 12.84 21.45 0.28 -52.61 16 13 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 O -0.39 -20.88 8.89 -148.98 -1.32 -22.20 16 18 C 0.04 1.85 10.81 113.37 1.23 3.08 16 19 C -0.07 -3.07 9.34 22.25 0.21 -2.86 16 20 C -0.21 -6.86 9.04 22.37 0.20 -6.66 16 21 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 22 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 24 H 0.15 4.14 8.06 -2.92 -0.02 4.11 16 25 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 26 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.11 4.88 7.63 -2.91 -0.02 4.86 16 31 H 0.15 3.92 6.30 -2.91 -0.02 3.90 16 Total: -1.00 -66.05 271.30 5.10 -60.95 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.11 Total: 8.81 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 3.99 Total: -30.89 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.28 Total: -52.61 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -2.29 Total: -32.42 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.05 5.10 -60.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085260.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.201 kcal (2) G-P(sol) polarization free energy of solvation -66.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds