Wall clock time and date at job start Mon Mar 30 2020 03:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30594 * 1 3 3 Si 1.86803 * 120.00163 * 2 1 4 4 H 1.48502 * 109.46976 * 239.99341 * 3 2 1 5 5 H 1.48498 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46939 * 119.99876 * 3 2 1 7 7 C 1.40386 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00520 * 179.97438 * 7 2 1 9 9 C 1.40014 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.39120 * 126.34660 * 179.97438 * 9 7 2 11 11 C 1.40461 * 107.52698 * 179.97438 * 10 9 7 12 12 N 1.39236 * 125.80197 * 179.97438 * 11 10 9 13 13 C 1.46847 * 111.00047 * 179.97438 * 12 11 10 14 14 C 1.53034 * 109.51345 * 185.84779 * 13 12 11 15 15 C 1.53123 * 109.27992 * 300.80438 * 14 13 12 16 16 C 1.53127 * 109.15019 * 57.67185 * 15 14 13 17 17 C 1.46843 * 110.99914 * 304.21306 * 12 11 10 18 18 N 1.31126 * 108.40008 * 0.22856 * 11 10 9 19 19 O 1.35135 * 126.34983 * 359.95261 * 9 7 2 20 20 H 0.97007 * 119.99865 * 0.02562 * 1 2 3 21 21 H 1.07990 * 126.24123 * 359.96696 * 10 9 7 22 22 H 1.09002 * 109.46481 * 305.85931 * 13 12 11 23 23 H 1.08994 * 109.46283 * 65.83784 * 13 12 11 24 24 H 1.08997 * 109.50952 * 60.75924 * 14 13 12 25 25 H 1.08998 * 109.50459 * 180.87821 * 14 13 12 26 26 H 1.09003 * 109.53012 * 297.76758 * 15 14 13 27 27 H 1.08997 * 109.57453 * 177.60035 * 15 14 13 28 28 H 1.08997 * 109.49981 * 182.39822 * 16 15 14 29 29 H 1.08998 * 109.53089 * 62.30397 * 16 15 14 30 30 H 1.08993 * 109.46313 * 294.17299 * 17 12 11 31 31 H 1.09000 * 109.46480 * 54.15409 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 3.0939 1.6963 -1.2124 5 1 1.2751 2.7465 -0.0006 6 1 3.0937 1.6963 1.2125 7 6 2.0079 -1.2158 0.0005 8 1 3.0879 -1.2159 0.0001 9 6 1.3078 -2.4283 0.0005 10 6 1.8659 -3.7027 0.0005 11 6 0.8087 -4.6275 0.0011 12 7 0.9392 -6.0137 0.0008 13 6 -0.3764 -6.6661 0.0023 14 6 -0.1967 -8.1788 0.1489 15 6 0.6518 -8.7021 -1.0134 16 6 1.9978 -7.9720 -1.0213 17 6 1.7551 -6.4652 -1.1335 18 7 -0.3220 -3.9635 -0.0035 19 8 -0.0353 -2.5778 0.0010 20 1 -0.4850 0.8401 -0.0004 21 1 2.9198 -3.9380 0.0000 22 1 -0.9683 -6.2882 0.8359 23 1 -0.8897 -6.4505 -0.9347 24 1 0.3044 -8.3961 1.0921 25 1 -1.1724 -8.6643 0.1342 26 1 0.1329 -8.5196 -1.9545 27 1 0.8186 -9.7722 -0.8909 28 1 2.5899 -8.3097 -1.8719 29 1 2.5339 -8.1862 -0.0968 30 1 1.2322 -6.2503 -2.0653 31 1 2.7111 -5.9416 -1.1244 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260465745.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:37 Heat of formation + Delta-G solvation = 3.709969 kcal Electronic energy + Delta-G solvation = -15019.791830 eV Core-core repulsion = 12494.892024 eV Total energy + Delta-G solvation = -2524.899806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68866 -39.75936 -35.96598 -34.96204 -32.11974 -31.66602 -31.29582 -27.63380 -25.54718 -24.14736 -22.21402 -21.32698 -20.61274 -19.56701 -17.33453 -16.80899 -16.22997 -16.13931 -15.67772 -15.54272 -14.91578 -14.79866 -14.32985 -14.14859 -13.90453 -13.28526 -13.13039 -13.02829 -12.60973 -12.23147 -12.03709 -11.91760 -11.60268 -11.52215 -11.41186 -11.27952 -11.12971 -9.74384 -9.44403 -8.95081 -6.97151 0.94795 1.36631 1.53149 1.55450 1.98807 2.11594 2.42668 3.04430 3.22012 3.80154 3.85916 4.00826 4.15167 4.31118 4.40475 4.52714 4.59818 4.80457 4.85298 4.89125 4.91947 5.00479 5.14470 5.17890 5.20440 5.26603 5.38097 5.48573 5.74894 6.02942 6.26748 6.39781 6.51011 7.27812 8.05293 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.071548 B = 0.006300 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.251803 B = 4443.417409 C = 4735.962272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.020 3.980 3 Si 1.019 2.981 4 H -0.247 1.247 5 H -0.263 1.263 6 H -0.248 1.248 7 C -0.446 4.446 8 H 0.125 0.875 9 C 0.203 3.797 10 C -0.482 4.482 11 C 0.288 3.712 12 N -0.455 5.455 13 C 0.059 3.941 14 C -0.109 4.109 15 C -0.119 4.119 16 C -0.108 4.108 17 C 0.061 3.939 18 N -0.499 5.499 19 O -0.116 6.116 20 H 0.303 0.697 21 H 0.130 0.870 22 H 0.056 0.944 23 H 0.025 0.975 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -8.976 -2.222 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.201 4.201 3 Si 0.835 3.165 4 H -0.171 1.171 5 H -0.187 1.187 6 H -0.171 1.171 7 C -0.475 4.475 8 H 0.143 0.857 9 C 0.144 3.856 10 C -0.512 4.512 11 C 0.036 3.964 12 N -0.179 5.179 13 C -0.068 4.068 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.145 4.145 17 C -0.065 4.065 18 N -0.267 5.267 19 O -0.118 6.118 20 H 0.115 0.885 21 H 0.147 0.853 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.189 -9.064 -1.810 9.778 hybrid contribution 0.350 1.104 -0.486 1.256 sum 3.538 -7.960 -2.297 9.009 Atomic orbital electron populations 1.69788 1.10095 1.32741 1.29112 1.27591 0.95829 1.06470 0.90222 0.84716 0.78290 0.72421 0.81092 1.17056 1.18685 1.17130 1.19633 0.96137 0.87945 1.43796 0.85742 1.20706 0.82768 0.95489 0.86644 1.21555 0.98375 0.89383 1.41928 1.21419 0.92649 0.90689 0.91622 1.59112 1.17160 0.98769 1.42897 1.22105 0.87964 0.96675 1.00098 1.21634 1.01772 0.90919 1.00292 1.21634 0.95138 1.01037 0.97829 1.21642 0.98483 0.90483 1.03920 1.22280 0.96816 0.98664 0.88744 1.80100 1.18843 0.85515 1.42278 1.89265 1.21707 1.19832 1.81013 0.88546 0.85251 0.92571 0.95652 0.90701 0.89214 0.92226 0.88507 0.88472 0.90493 0.95546 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.89 12.02 21.90 0.26 -42.63 16 2 C 0.02 1.00 5.50 85.40 0.47 1.47 16 3 Si 1.02 35.40 29.56 68.60 2.03 37.43 16 4 H -0.25 -8.07 7.11 99.48 0.71 -7.37 16 5 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 6 H -0.25 -8.14 7.11 99.48 0.71 -7.44 16 7 C -0.45 -24.06 9.35 23.22 0.22 -23.84 16 8 H 0.12 6.00 7.85 -2.91 -0.02 5.98 16 9 C 0.20 12.19 6.87 22.91 0.16 12.35 16 10 C -0.48 -26.66 10.12 23.02 0.23 -26.43 16 11 C 0.29 15.38 6.55 133.68 0.88 16.26 16 12 N -0.46 -19.11 4.73 -701.52 -3.32 -22.43 16 13 C 0.06 2.19 4.87 86.32 0.42 2.61 16 14 C -0.11 -2.73 6.09 30.65 0.19 -2.55 16 15 C -0.12 -2.48 6.00 30.68 0.18 -2.29 16 16 C -0.11 -2.50 6.09 30.65 0.19 -2.31 16 17 C 0.06 2.09 5.33 86.33 0.46 2.55 16 18 N -0.50 -29.78 11.91 -55.06 -0.66 -30.44 16 19 O -0.12 -7.52 10.48 26.26 0.28 -7.25 16 20 H 0.30 14.40 8.29 -92.70 -0.77 13.63 16 21 H 0.13 6.54 7.89 -2.92 -0.02 6.52 16 22 H 0.06 2.32 7.91 -2.39 -0.02 2.30 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 2.70 7.41 -2.39 -0.02 2.68 16 Total: -1.00 -70.49 261.28 3.10 -67.39 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.11 Total: 20.11 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.39 Total: -22.19 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.71 Total: -95.50 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: 0.28 Total: -7.25 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -70.49 3.10 -67.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465745.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.103 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds