Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47602 * 2 1 4 4 H 1.07993 * 119.99920 * 239.99948 * 3 2 1 5 5 C 1.37874 * 119.99655 * 60.00350 * 3 2 1 6 6 N 1.31514 * 120.00391 * 359.97438 * 5 3 2 7 7 Si 1.86806 * 119.99596 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47342 * 59.99496 * 7 5 3 9 9 H 1.48498 * 109.46879 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46952 * 299.99091 * 7 5 3 11 11 C 1.53009 * 109.46832 * 120.00329 * 2 1 3 12 12 O 1.42900 * 109.46849 * 179.97438 * 11 2 1 13 13 C 1.50701 * 109.46959 * 239.99858 * 2 1 3 14 14 C 1.38173 * 120.02920 * 240.00531 * 13 2 1 15 15 C 1.38232 * 120.05823 * 180.02562 * 14 13 2 16 16 C 1.38294 * 120.11124 * 359.97438 * 15 14 13 17 17 C 1.38122 * 120.05499 * 359.97438 * 16 15 14 18 18 C 1.38705 * 120.02828 * 60.25801 * 13 2 1 19 19 O 1.35904 * 120.05924 * 0.02562 * 18 13 2 20 20 H 1.08993 * 109.47505 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46949 * 300.00622 * 1 2 3 22 22 H 1.09001 * 109.46562 * 59.99405 * 1 2 3 23 23 H 0.97001 * 120.00245 * 180.02562 * 6 5 3 24 24 H 1.08999 * 109.46577 * 299.99277 * 11 2 1 25 25 H 1.08993 * 109.47006 * 59.99779 * 11 2 1 26 26 H 0.96706 * 113.99513 * 180.02562 * 12 11 2 27 27 H 1.08008 * 119.97043 * 359.97438 * 14 13 2 28 28 H 1.08003 * 119.94745 * 179.97438 * 15 14 13 29 29 H 1.07999 * 119.97251 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.02504 * 180.02562 * 17 16 15 31 31 H 0.96692 * 113.99886 * 270.25458 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 2.6533 1.7739 -0.8100 5 6 1.6994 2.2697 1.0341 6 7 0.9429 1.8397 2.0203 7 14 2.3217 4.0311 1.0338 8 1 1.8262 4.7309 -0.1787 9 1 1.8264 4.7312 2.2460 10 1 3.8066 4.0314 1.0335 11 6 2.0399 -0.7214 1.2493 12 8 3.4689 -0.7219 1.2490 13 6 2.0323 -0.7105 -1.2305 14 6 2.8266 -1.8340 -1.1044 15 6 3.2881 -2.4858 -2.2326 16 6 2.9558 -2.0158 -3.4901 17 6 2.1612 -0.8937 -3.6215 18 6 1.7019 -0.2340 -2.4905 19 8 0.9255 0.8742 -2.6173 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 0.7084 2.4371 2.7476 24 1 1.6766 -0.2074 2.1392 25 1 1.6765 -1.7489 1.2492 26 1 3.8622 -1.1641 2.0139 27 1 3.0878 -2.2028 -0.1234 28 1 3.9092 -3.3636 -2.1320 29 1 3.3173 -2.5271 -4.3701 30 1 1.9017 -0.5273 -4.6038 31 1 -0.0227 0.6881 -2.6522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260628223.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = -82.932141 kcal Electronic energy + Delta-G solvation = -15804.274598 eV Core-core repulsion = 13243.324958 eV Total energy + Delta-G solvation = -2560.949641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89005 -38.05987 -37.22010 -35.54341 -33.26882 -30.78672 -29.75781 -27.17900 -26.48252 -23.73700 -22.93898 -20.79571 -19.02093 -18.08745 -17.80319 -17.17423 -16.49547 -16.16707 -15.63398 -15.28252 -14.76625 -14.53397 -13.69878 -13.44034 -13.24259 -12.95461 -12.80142 -12.68281 -12.62211 -12.25801 -12.17095 -11.99164 -11.57151 -11.11687 -10.67963 -10.42674 -10.20637 -9.48329 -9.14597 -7.95526 -6.03115 0.58153 0.70869 1.41014 1.41523 1.49463 2.49245 3.01161 3.28629 3.62894 3.90424 4.23356 4.26396 4.39362 4.63479 4.72327 4.84262 4.97744 5.02402 5.14715 5.24100 5.37666 5.43905 5.57341 5.67444 5.78623 5.82124 6.07945 6.16326 6.25561 6.49485 6.90136 7.12228 7.29337 7.58784 9.03123 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.030891 B = 0.011738 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.195841 B = 2384.887563 C = 2718.933933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.099 3.901 3 C -0.463 4.463 4 H 0.025 0.975 5 C 0.022 3.978 6 N -0.912 5.912 7 Si 0.938 3.062 8 H -0.280 1.280 9 H -0.281 1.281 10 H -0.286 1.286 11 C 0.091 3.909 12 O -0.574 6.574 13 C -0.089 4.089 14 C -0.119 4.119 15 C -0.139 4.139 16 C -0.123 4.123 17 C -0.163 4.163 18 C 0.086 3.914 19 O -0.498 6.498 20 H 0.026 0.974 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.257 0.743 24 H 0.055 0.945 25 H 0.019 0.981 26 H 0.370 0.630 27 H 0.130 0.870 28 H 0.144 0.856 29 H 0.152 0.848 30 H 0.137 0.863 31 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -8.419 -5.883 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 C -0.501 4.501 4 H 0.044 0.956 5 C -0.175 4.175 6 N -0.553 5.553 7 Si 0.766 3.234 8 H -0.206 1.206 9 H -0.206 1.206 10 H -0.212 1.212 11 C 0.014 3.986 12 O -0.378 6.378 13 C -0.089 4.089 14 C -0.137 4.137 15 C -0.157 4.157 16 C -0.141 4.141 17 C -0.181 4.181 18 C 0.042 3.958 19 O -0.309 6.309 20 H 0.045 0.955 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.216 0.784 27 H 0.148 0.852 28 H 0.162 0.838 29 H 0.170 0.830 30 H 0.155 0.845 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.946 -7.708 -6.277 9.985 hybrid contribution -0.123 0.784 0.833 1.150 sum 0.823 -6.924 -5.444 8.846 Atomic orbital electron populations 1.21669 0.96205 0.98006 1.02382 1.17199 0.92592 0.92808 0.87539 1.20831 1.28905 0.95387 1.05020 0.95646 1.25323 0.95840 1.00808 0.95554 1.69834 1.38427 1.35962 1.11064 0.85934 0.78227 0.82196 0.77053 1.20635 1.20643 1.21183 1.22205 0.79695 0.95373 1.01360 1.86610 1.21117 1.81787 1.48319 1.20853 0.97809 0.94691 0.95580 1.21448 0.97030 0.95217 0.99986 1.21433 1.00973 1.01023 0.92247 1.21224 0.98437 0.96213 0.98214 1.21587 1.01699 0.96849 0.97994 1.18627 0.97201 0.87820 0.92171 1.84902 1.21089 1.29380 1.95521 0.95479 0.91537 0.93625 0.93332 0.92718 0.96294 0.78390 0.85221 0.83776 0.83039 0.84496 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.04 71.98 0.58 -5.17 16 2 C 0.10 4.83 0.32 -53.67 -0.02 4.81 16 3 C -0.46 -26.02 6.57 25.60 0.17 -25.85 16 4 H 0.03 1.55 7.52 -2.91 -0.02 1.53 16 5 C 0.02 1.20 5.15 84.65 0.44 1.64 16 6 N -0.91 -50.38 9.35 21.45 0.20 -50.18 16 7 Si 0.94 45.84 29.54 68.60 2.03 47.87 16 8 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 11 C 0.09 4.22 4.93 71.99 0.36 4.58 16 12 O -0.57 -25.24 10.90 -148.98 -1.62 -26.87 16 13 C -0.09 -3.93 4.64 -19.77 -0.09 -4.03 16 14 C -0.12 -4.62 8.47 22.25 0.19 -4.43 16 15 C -0.14 -4.36 10.04 22.28 0.22 -4.14 16 16 C -0.12 -3.61 10.04 22.26 0.22 -3.38 16 17 C -0.16 -5.48 9.99 22.37 0.22 -5.26 16 18 C 0.09 3.55 6.19 22.51 0.14 3.69 16 19 O -0.50 -20.71 11.07 -92.47 -1.02 -21.74 16 20 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.07 3.37 6.07 -2.39 -0.01 3.36 16 22 H 0.04 1.97 5.34 -2.39 -0.01 1.95 16 23 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 24 H 0.05 2.81 6.07 -2.39 -0.01 2.79 16 25 H 0.02 0.79 7.51 -2.39 -0.02 0.77 16 26 H 0.37 12.21 9.12 -74.05 -0.68 11.53 16 27 H 0.13 4.93 5.15 -2.91 -0.01 4.92 16 28 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 29 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.39 12.80 7.56 -74.06 -0.56 12.24 16 Total: -1.00 -65.60 251.53 1.94 -63.66 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.07 Total: 24.80 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 2.43 Total: -37.54 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.20 Total: -50.18 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.65 Total: -48.60 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -65.60 1.94 -63.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260628223.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.272 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds