Wall clock time and date at job start Mon Mar 30 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46304 * 33.67352 * 3 2 1 5 5 C 1.50696 * 109.47123 * 273.67619 * 3 2 1 6 6 H 1.08005 * 120.00002 * 324.71192 * 5 3 2 7 7 C 1.37871 * 120.00129 * 144.72126 * 5 3 2 8 8 N 1.31521 * 119.99970 * 5.48112 * 7 5 3 9 9 Si 1.86803 * 120.00440 * 185.48630 * 7 5 3 10 10 H 1.48509 * 109.47022 * 89.99513 * 9 7 5 11 11 H 1.48495 * 109.47535 * 209.99836 * 9 7 5 12 12 H 1.48503 * 109.46804 * 329.99917 * 9 7 5 13 13 C 1.52998 * 109.47061 * 153.66997 * 3 2 1 14 14 C 1.50696 * 109.47363 * 295.00264 * 13 3 2 15 15 C 1.38270 * 119.94804 * 270.30010 * 14 13 3 16 16 C 1.38138 * 120.05687 * 180.30194 * 15 14 13 17 17 C 1.38727 * 119.94532 * 359.41800 * 16 15 14 18 18 O 1.35895 * 120.05858 * 180.30058 * 17 16 15 19 19 C 1.38732 * 119.88983 * 0.28083 * 17 16 15 20 20 C 1.38142 * 119.94128 * 0.02562 * 19 17 16 21 21 H 1.09000 * 109.47134 * 295.19023 * 1 2 3 22 22 H 1.09004 * 109.46870 * 55.18598 * 1 2 3 23 23 H 1.09000 * 109.47391 * 175.18950 * 1 2 3 24 24 H 0.96999 * 119.99609 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.47091 * 174.99841 * 13 3 2 26 26 H 1.08998 * 109.47185 * 55.00472 * 13 3 2 27 27 H 1.08003 * 119.96607 * 0.02562 * 15 14 13 28 28 H 1.08000 * 120.02851 * 179.69725 * 16 15 14 29 29 H 0.96708 * 114.00262 * 89.99933 * 18 17 16 30 30 H 1.07994 * 120.03111 * 180.02562 * 19 17 16 31 31 H 1.08001 * 119.97007 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3767 1.9851 0.5698 5 6 2.1314 1.8014 -1.4178 6 1 2.3597 1.1088 -2.2146 7 6 1.9510 3.1392 -1.6980 8 7 1.7803 3.9992 -0.7177 9 14 1.9487 3.7305 -3.4700 10 1 0.5639 3.6868 -4.0047 11 1 2.4577 5.1243 -3.5275 12 1 2.8226 2.8503 -4.2866 13 6 3.3988 1.2454 0.6398 14 6 3.2665 0.8679 2.0927 15 6 3.1147 1.8531 3.0509 16 6 2.9995 1.5099 4.3840 17 6 3.0242 0.1748 4.7599 18 8 2.9050 -0.1658 6.0701 19 6 3.1705 -0.8123 3.7961 20 6 3.2916 -0.4635 2.4649 21 1 -0.3633 0.4374 0.9299 22 1 -0.3633 0.5867 -0.8438 23 1 -0.3634 -1.0240 -0.0862 24 1 1.6530 4.9404 -0.9149 25 1 3.8780 2.2212 0.5601 26 1 4.0044 0.5001 0.1244 27 1 3.0905 2.8922 2.7571 28 1 2.8858 2.2801 5.1325 29 1 1.9927 -0.3061 6.3586 30 1 3.1896 -1.8524 4.0861 31 1 3.4059 -1.2315 1.7142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:30 Heat of formation + Delta-G solvation = -77.407028 kcal Electronic energy + Delta-G solvation = -14914.529359 eV Core-core repulsion = 12353.819305 eV Total energy + Delta-G solvation = -2560.710054 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30371 -37.13177 -36.05143 -32.92111 -31.36696 -30.49352 -27.93027 -25.39343 -24.80814 -22.27710 -21.65809 -20.07779 -18.05176 -16.72229 -15.64048 -15.39098 -14.98479 -14.72859 -14.21790 -13.90231 -13.64704 -13.06668 -12.97191 -12.38116 -11.91633 -11.70868 -11.36995 -11.07499 -10.88099 -10.67065 -10.55181 -10.40462 -10.03849 -9.76855 -9.33002 -8.62284 -8.51397 -8.23904 -7.78467 -6.15611 -4.24030 1.73517 1.84871 3.23567 3.30796 3.34818 4.10459 4.33237 4.58368 5.06184 5.28834 5.36705 5.37955 5.68680 5.98001 6.00305 6.27348 6.29274 6.32966 6.40409 6.59743 6.67816 6.83651 6.85198 6.89077 7.12271 7.29619 7.41959 7.56168 7.76651 7.93037 8.21556 8.40551 9.01919 9.46485 10.89629 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.042733 B = 0.007234 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.069505 B = 3869.423221 C = 4170.346214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.408 6.408 3 C 0.209 3.791 4 H 0.046 0.954 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 C -0.067 4.067 14 C -0.062 4.062 15 C -0.104 4.104 16 C -0.147 4.147 17 C 0.074 3.926 18 O -0.505 6.505 19 C -0.149 4.149 20 C -0.094 4.094 21 H 0.019 0.981 22 H 0.038 0.962 23 H 0.058 0.942 24 H 0.264 0.736 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.381 0.619 30 H 0.119 0.881 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -5.123 7.499 9.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.328 6.328 3 C 0.153 3.847 4 H 0.064 0.936 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 C -0.104 4.104 14 C -0.062 4.062 15 C -0.122 4.122 16 C -0.166 4.166 17 C 0.031 3.969 18 O -0.314 6.314 19 C -0.167 4.167 20 C -0.112 4.112 21 H 0.038 0.962 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.236 0.764 30 H 0.137 0.863 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.495 -5.039 7.531 9.075 hybrid contribution -0.822 0.678 -0.875 1.378 sum -0.326 -4.361 6.656 7.964 Atomic orbital electron populations 1.22311 0.83643 0.99657 0.98993 1.87663 1.17631 1.32284 1.95224 1.19840 0.89561 0.80043 0.95209 0.93630 1.21608 1.48739 0.93224 0.93847 0.92031 1.25030 0.94285 0.96802 0.97523 1.69930 1.48611 1.02887 1.31295 0.86543 0.78438 0.77964 0.84794 1.20531 1.21122 1.19655 1.20888 0.99995 1.01499 0.88056 1.20456 0.95736 0.92766 0.97267 1.21083 0.99295 1.00107 0.91692 1.21306 1.03327 0.95342 0.96578 1.18379 1.03733 0.91986 0.82850 1.84806 1.31946 1.91317 1.23329 1.21303 1.03598 0.98778 0.93052 1.20971 0.99098 0.96340 0.94772 0.96234 0.94305 0.92314 0.92595 0.90069 0.92108 0.85412 0.86259 0.76433 0.86332 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 10.79 101.05 1.09 2.13 16 2 O -0.41 -9.59 9.84 -35.23 -0.35 -9.93 16 3 C 0.21 5.23 2.17 -27.89 -0.06 5.17 16 4 H 0.05 1.25 7.11 -51.93 -0.37 0.88 16 5 C -0.54 -14.54 8.46 -34.44 -0.29 -14.84 16 6 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 7 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 8 N -0.89 -24.61 12.84 55.43 0.71 -23.90 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 C -0.07 -1.49 5.03 -27.89 -0.14 -1.63 16 14 C -0.06 -1.23 4.97 -104.60 -0.52 -1.75 16 15 C -0.10 -1.93 9.69 -39.61 -0.38 -2.32 16 16 C -0.15 -2.44 9.99 -39.44 -0.39 -2.84 16 17 C 0.07 1.20 6.70 -39.22 -0.26 0.93 16 18 O -0.50 -6.98 13.50 -19.41 -0.26 -7.24 16 19 C -0.15 -2.41 9.99 -39.43 -0.39 -2.80 16 20 C -0.09 -1.69 9.39 -39.61 -0.37 -2.06 16 21 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.04 0.83 8.00 -51.93 -0.42 0.41 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.08 1.89 8.09 -51.93 -0.42 1.47 16 26 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 27 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 28 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.38 3.40 9.06 45.56 0.41 3.82 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 274.68 15.07 4.14 4.14 Total: -1.00 -29.47 274.68 -5.90 -35.37 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.29 Total: 4.09 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.83 Total: -18.30 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.71 Total: -23.90 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.61 Total: -17.17 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.47 -5.90 -35.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.039 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds