Wall clock time and date at job start Mon Mar 30 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46304 * 33.67352 * 3 2 1 5 5 C 1.50696 * 109.47123 * 273.67619 * 3 2 1 6 6 H 1.08005 * 120.00002 * 324.71192 * 5 3 2 7 7 C 1.37871 * 120.00129 * 144.72126 * 5 3 2 8 8 N 1.31521 * 119.99970 * 5.48112 * 7 5 3 9 9 Si 1.86803 * 120.00440 * 185.48630 * 7 5 3 10 10 H 1.48509 * 109.47022 * 89.99513 * 9 7 5 11 11 H 1.48495 * 109.47535 * 209.99836 * 9 7 5 12 12 H 1.48503 * 109.46804 * 329.99917 * 9 7 5 13 13 C 1.52998 * 109.47061 * 153.66997 * 3 2 1 14 14 C 1.50696 * 109.47363 * 295.00264 * 13 3 2 15 15 C 1.38270 * 119.94804 * 270.30010 * 14 13 3 16 16 C 1.38138 * 120.05687 * 180.30194 * 15 14 13 17 17 C 1.38727 * 119.94532 * 359.41800 * 16 15 14 18 18 O 1.35895 * 120.05858 * 180.30058 * 17 16 15 19 19 C 1.38732 * 119.88983 * 0.28083 * 17 16 15 20 20 C 1.38142 * 119.94128 * 0.02562 * 19 17 16 21 21 H 1.09000 * 109.47134 * 295.19023 * 1 2 3 22 22 H 1.09004 * 109.46870 * 55.18598 * 1 2 3 23 23 H 1.09000 * 109.47391 * 175.18950 * 1 2 3 24 24 H 0.96999 * 119.99609 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.47091 * 174.99841 * 13 3 2 26 26 H 1.08998 * 109.47185 * 55.00472 * 13 3 2 27 27 H 1.08003 * 119.96607 * 0.02562 * 15 14 13 28 28 H 1.08000 * 120.02851 * 179.69725 * 16 15 14 29 29 H 0.96708 * 114.00262 * 89.99933 * 18 17 16 30 30 H 1.07994 * 120.03111 * 180.02562 * 19 17 16 31 31 H 1.08001 * 119.97007 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3767 1.9851 0.5698 5 6 2.1314 1.8014 -1.4178 6 1 2.3597 1.1088 -2.2146 7 6 1.9510 3.1392 -1.6980 8 7 1.7803 3.9992 -0.7177 9 14 1.9487 3.7305 -3.4700 10 1 0.5639 3.6868 -4.0047 11 1 2.4577 5.1243 -3.5275 12 1 2.8226 2.8503 -4.2866 13 6 3.3988 1.2454 0.6398 14 6 3.2665 0.8679 2.0927 15 6 3.1147 1.8531 3.0509 16 6 2.9995 1.5099 4.3840 17 6 3.0242 0.1748 4.7599 18 8 2.9050 -0.1658 6.0701 19 6 3.1705 -0.8123 3.7961 20 6 3.2916 -0.4635 2.4649 21 1 -0.3633 0.4374 0.9299 22 1 -0.3633 0.5867 -0.8438 23 1 -0.3634 -1.0240 -0.0862 24 1 1.6530 4.9404 -0.9149 25 1 3.8780 2.2212 0.5601 26 1 4.0044 0.5001 0.1244 27 1 3.0905 2.8922 2.7571 28 1 2.8858 2.2801 5.1325 29 1 1.9927 -0.3061 6.3586 30 1 3.1896 -1.8524 4.0861 31 1 3.4059 -1.2315 1.7142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:30 Heat of formation + Delta-G solvation = -96.855837 kcal Electronic energy + Delta-G solvation = -14915.372723 eV Core-core repulsion = 12353.819305 eV Total energy + Delta-G solvation = -2561.553417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.63729 -38.76647 -37.48091 -34.90678 -33.02144 -31.83897 -29.63375 -27.21108 -26.52480 -23.63546 -23.32619 -21.70945 -19.24745 -18.77061 -17.43721 -16.72563 -16.49529 -16.10654 -16.04034 -15.67108 -15.32242 -14.49971 -14.29115 -14.14887 -13.43650 -13.30499 -13.12687 -12.88040 -12.51272 -12.34629 -12.30303 -12.15991 -11.59573 -11.31463 -11.27063 -10.64120 -10.13141 -9.84182 -9.25335 -8.20747 -6.37252 0.38797 0.49588 1.39234 1.40493 1.51284 2.37632 2.77377 3.04460 3.39223 3.47580 4.03080 4.11670 4.18678 4.55451 4.59580 4.64759 4.74767 4.85139 4.92249 4.97790 5.05666 5.15871 5.28781 5.47370 5.51566 5.61485 5.64915 5.90095 6.01074 6.18970 6.44667 6.92046 6.98957 7.37954 8.83488 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.042733 B = 0.007234 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.069505 B = 3869.423221 C = 4170.346214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.415 6.415 3 C 0.217 3.783 4 H 0.015 0.985 5 C -0.558 4.558 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.915 5.915 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.268 1.268 13 C -0.056 4.056 14 C -0.087 4.087 15 C -0.116 4.116 16 C -0.148 4.148 17 C 0.088 3.912 18 O -0.505 6.505 19 C -0.145 4.145 20 C -0.097 4.097 21 H 0.024 0.976 22 H 0.022 0.978 23 H 0.097 0.903 24 H 0.267 0.733 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.407 0.593 30 H 0.147 0.853 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -6.169 8.421 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.335 6.335 3 C 0.160 3.840 4 H 0.033 0.967 5 C -0.596 4.596 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.554 5.554 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.193 1.193 13 C -0.094 4.094 14 C -0.087 4.087 15 C -0.134 4.134 16 C -0.167 4.167 17 C 0.044 3.956 18 O -0.318 6.318 19 C -0.164 4.164 20 C -0.115 4.115 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.115 0.885 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.266 0.734 30 H 0.165 0.835 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.206 -6.100 8.468 10.438 hybrid contribution -0.787 0.936 -1.031 1.600 sum -0.581 -5.164 7.436 9.072 Atomic orbital electron populations 1.22497 0.82058 1.01845 0.98530 1.87630 1.19392 1.31240 1.95209 1.19636 0.90339 0.80010 0.93972 0.96661 1.21845 1.49358 0.93604 0.94754 0.93079 1.25756 0.93812 0.96804 1.01418 1.70034 1.49104 1.03140 1.33091 0.85571 0.78602 0.77574 0.80032 1.19909 1.20443 1.19290 1.20590 0.98232 1.00283 0.90276 1.20250 0.98583 0.94135 0.95757 1.21044 1.00240 0.99357 0.92787 1.21489 1.02712 0.96564 0.95895 1.18419 1.01843 0.91570 0.83780 1.84745 1.34305 1.91059 1.21706 1.21550 1.02403 1.00331 0.92068 1.21017 0.99084 0.95384 0.95996 0.95778 0.95940 0.88504 0.92396 0.92283 0.92172 0.86730 0.84158 0.73429 0.83515 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.91 10.79 113.37 1.22 3.13 16 2 O -0.41 -19.57 9.84 -148.98 -1.47 -21.04 16 3 C 0.22 11.14 2.17 29.85 0.06 11.21 16 4 H 0.02 0.88 7.11 -2.39 -0.02 0.86 16 5 C -0.56 -31.01 8.46 25.60 0.22 -30.79 16 6 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 7 C 0.02 1.23 5.45 84.65 0.46 1.69 16 8 N -0.92 -51.83 12.84 21.45 0.28 -51.56 16 9 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C -0.06 -2.59 5.03 29.85 0.15 -2.44 16 14 C -0.09 -3.49 4.97 -19.85 -0.10 -3.59 16 15 C -0.12 -4.37 9.69 22.25 0.22 -4.15 16 16 C -0.15 -4.68 9.99 22.36 0.22 -4.45 16 17 C 0.09 2.57 6.70 22.50 0.15 2.72 16 18 O -0.51 -11.95 13.50 -92.37 -1.25 -13.20 16 19 C -0.15 -4.30 9.99 22.37 0.22 -4.07 16 20 C -0.10 -3.37 9.39 22.25 0.21 -3.16 16 21 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 23 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 24 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.06 2.91 8.09 -2.39 -0.02 2.89 16 26 H 0.06 2.69 8.08 -2.39 -0.02 2.68 16 27 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 28 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.41 5.48 9.06 -74.05 -0.67 4.81 16 30 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -63.10 274.68 3.08 -60.02 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.45 Total: 14.66 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.04 Total: -33.90 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.28 Total: -51.56 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -2.71 Total: -34.24 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.10 3.08 -60.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.832 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds