Wall clock time and date at job start Mon Mar 30 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86805 * 119.99654 * 2 1 4 4 H 1.48496 * 109.47180 * 270.59678 * 3 2 1 5 5 H 1.48500 * 109.47076 * 30.59751 * 3 2 1 6 6 H 1.48500 * 109.46902 * 150.59442 * 3 2 1 7 7 C 1.40067 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00437 * 344.62162 * 7 2 1 9 9 C 1.40068 * 119.99873 * 164.61437 * 7 2 1 10 10 C 1.39623 * 127.06016 * 341.31106 * 9 7 2 11 11 N 1.33022 * 107.46109 * 180.25926 * 10 9 7 12 12 C 1.31016 * 109.98086 * 359.75916 * 11 10 9 13 13 N 1.35078 * 109.64726 * 0.02562 * 12 11 10 14 14 C 1.46497 * 126.48593 * 179.97438 * 13 12 11 15 15 C 1.53171 * 109.54245 * 60.02633 * 14 13 12 16 16 C 1.53093 * 109.16573 * 183.15179 * 15 14 13 17 17 O 1.42901 * 109.41250 * 57.60342 * 16 15 14 18 18 C 1.42903 * 114.09998 * 298.84627 * 17 16 15 19 19 C 1.53085 * 109.41472 * 61.15842 * 18 17 16 20 20 H 0.97000 * 120.00471 * 359.97438 * 1 2 3 21 21 H 1.07996 * 126.26785 * 0.02562 * 10 9 7 22 22 H 1.07998 * 125.17763 * 180.02562 * 12 11 10 23 23 H 1.09002 * 109.61542 * 180.24534 * 14 13 12 24 24 H 1.09009 * 109.52553 * 63.24308 * 15 14 13 25 25 H 1.09002 * 109.57611 * 303.09222 * 15 14 13 26 26 H 1.08997 * 109.48069 * 177.59064 * 16 15 14 27 27 H 1.09004 * 109.47595 * 297.62712 * 16 15 14 28 28 H 1.08995 * 109.48125 * 301.17216 * 18 17 16 29 29 H 1.08998 * 109.47402 * 181.14118 * 18 17 16 30 30 H 1.09002 * 109.52094 * 182.48215 * 19 18 17 31 31 H 1.09000 * 109.52416 * 62.29436 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4773 2.0538 -1.4000 5 1 1.4462 2.6490 0.7126 6 1 3.5462 1.4367 0.6874 7 6 2.0089 -1.2130 -0.0005 8 1 1.4980 -2.1317 0.2471 9 6 3.3719 -1.2345 -0.3224 10 6 4.0923 -0.2486 -0.9995 11 7 5.3499 -0.6704 -1.0987 12 6 5.4746 -1.8443 -0.5305 13 7 4.2819 -2.2367 -0.0325 14 6 4.0028 -3.4885 0.6756 15 6 4.8673 -3.5669 1.9377 16 6 4.6272 -4.9118 2.6286 17 8 4.9261 -5.9729 1.7193 18 6 4.1161 -5.9782 0.5421 19 6 4.3357 -4.6762 -0.2325 20 1 -0.4851 0.8400 0.0004 21 1 3.6994 0.6838 -1.3772 22 1 6.3914 -2.4119 -0.4696 23 1 2.9492 -3.5253 0.9525 24 1 4.5977 -2.7563 2.6148 25 1 5.9192 -3.4797 1.6658 26 1 5.2715 -4.9908 3.5041 27 1 3.5840 -4.9807 2.9373 28 1 3.0664 -6.0611 0.8235 29 1 4.3924 -6.8255 -0.0854 30 1 3.6861 -4.6590 -1.1076 31 1 5.3767 -4.6119 -0.5493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157429.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:05 Heat of formation + Delta-G solvation = -20.756288 kcal Electronic energy + Delta-G solvation = -15425.536025 eV Core-core repulsion = 12899.575283 eV Total energy + Delta-G solvation = -2525.960742 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.32234 -40.05186 -35.75366 -35.57592 -32.14646 -32.11012 -31.10916 -26.53642 -25.72794 -24.58865 -22.81616 -21.90837 -20.36408 -19.19806 -18.03082 -17.02153 -16.84494 -16.22649 -16.00234 -15.79386 -15.67272 -14.74911 -14.60158 -14.47039 -13.80599 -13.62768 -13.36126 -12.97354 -12.81625 -12.39650 -12.32587 -12.01560 -11.65819 -11.40447 -11.29713 -10.68713 -10.51778 -10.16403 -9.23682 -8.90908 -6.44811 1.09809 1.30044 1.45692 1.60334 2.14077 2.23505 2.45593 2.91369 3.09381 3.56132 3.76089 3.94340 4.00232 4.10514 4.22762 4.27562 4.46701 4.59960 4.67568 4.73395 4.79560 4.90789 4.97849 5.04873 5.07867 5.24559 5.45224 5.92358 6.16264 6.17822 6.45244 6.70032 7.00797 7.64662 8.17034 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.009270 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.621260 B = 3019.659457 C = 3372.179378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.067 3.933 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.066 0.934 9 C 0.168 3.832 10 C -0.223 4.223 11 N -0.505 5.505 12 C 0.103 3.897 13 N -0.483 5.483 14 C 0.140 3.860 15 C -0.154 4.154 16 C 0.069 3.931 17 O -0.391 6.391 18 C 0.070 3.930 19 C -0.156 4.156 20 H 0.296 0.704 21 H 0.135 0.865 22 H 0.212 0.788 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -9.504 4.785 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.150 4.150 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.502 4.502 8 H 0.084 0.916 9 C 0.053 3.947 10 C -0.367 4.367 11 N -0.223 5.223 12 C -0.174 4.174 13 N -0.173 5.173 14 C 0.037 3.963 15 C -0.193 4.193 16 C -0.008 4.008 17 O -0.310 6.310 18 C -0.008 4.008 19 C -0.194 4.194 20 H 0.106 0.894 21 H 0.152 0.848 22 H 0.229 0.771 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.140 0.860 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.546 -9.217 4.493 12.165 hybrid contribution -0.994 0.795 0.023 1.273 sum 5.552 -8.422 4.515 11.052 Atomic orbital electron populations 1.69618 1.08429 1.31412 1.37823 1.26285 0.95227 1.03034 0.90427 0.85521 0.78637 0.77323 0.79191 1.19493 1.20186 1.18977 1.18121 0.90506 0.95838 1.45687 0.91609 1.19034 0.90673 0.88552 0.96407 1.22059 0.91912 1.03660 1.19062 1.69321 1.20560 1.11417 1.20977 1.24443 0.90790 0.95405 1.06732 1.45430 1.08222 1.17084 1.46564 1.21333 1.00536 0.81710 0.92686 1.22522 1.00767 0.99924 0.96078 1.22653 1.01932 0.83882 0.92302 1.87904 1.61194 1.50032 1.31844 1.22640 0.95302 0.96553 0.86256 1.22542 1.03401 0.94612 0.98871 0.89362 0.84811 0.77115 0.90289 0.91177 0.90056 0.86023 0.92270 0.92309 0.86074 0.91351 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.53 13.93 21.85 0.30 -45.23 16 2 C 0.07 3.58 5.51 85.28 0.47 4.05 16 3 Si 0.97 45.24 24.53 68.60 1.68 46.92 16 4 H -0.27 -12.43 6.68 99.48 0.66 -11.76 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -13.19 6.56 99.48 0.65 -12.53 16 7 C -0.47 -25.70 9.48 23.16 0.22 -25.48 16 8 H 0.07 3.75 7.29 -2.91 -0.02 3.73 16 9 C 0.17 8.78 6.30 38.88 0.25 9.03 16 10 C -0.22 -11.98 9.26 84.85 0.79 -11.19 16 11 N -0.50 -25.52 11.18 -196.91 -2.20 -27.72 16 12 C 0.10 4.42 11.41 180.10 2.05 6.48 16 13 N -0.48 -21.06 2.67 -496.69 -1.33 -22.38 16 14 C 0.14 4.79 2.92 45.11 0.13 4.92 16 15 C -0.15 -4.27 5.51 30.68 0.17 -4.10 16 16 C 0.07 1.51 6.84 72.01 0.49 2.00 16 17 O -0.39 -9.22 10.77 -148.98 -1.60 -10.83 16 18 C 0.07 1.52 6.84 72.01 0.49 2.01 16 19 C -0.16 -4.31 5.50 30.68 0.17 -4.14 16 20 H 0.30 14.39 8.30 -92.71 -0.77 13.62 16 21 H 0.13 7.22 4.21 -2.91 -0.01 7.21 16 22 H 0.21 7.06 8.06 -2.91 -0.02 7.04 16 23 H 0.08 2.97 6.97 -2.39 -0.02 2.96 16 24 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.08 2.16 7.87 -2.39 -0.02 2.14 16 26 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.17 7.86 -2.39 -0.02 2.15 16 Total: -1.00 -64.72 252.42 3.12 -61.61 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.03 Total: 14.05 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.23 Total: -16.42 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -3.22 Total: -95.33 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.60 Total: -10.83 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.68 Total: 46.92 kcal Total: -64.72 3.12 -61.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157429.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.853 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds