Wall clock time and date at job start Mon Mar 30 2020 03:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86790 * 120.00159 * 2 1 4 4 H 1.48504 * 109.47328 * 274.98426 * 3 2 1 5 5 H 1.48496 * 109.47257 * 34.97944 * 3 2 1 6 6 H 1.48496 * 109.47408 * 154.98238 * 3 2 1 7 7 C 1.39827 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99634 * 186.01468 * 7 2 1 9 9 C 1.41412 * 120.00290 * 6.01425 * 7 2 1 10 10 C 1.41727 * 126.08212 * 174.52054 * 9 7 2 11 11 C 1.35288 * 107.82219 * 180.14047 * 10 9 7 12 12 O 1.35721 * 125.96870 * 179.90363 * 11 10 9 13 13 N 1.36247 * 108.05968 * 359.64718 * 11 10 9 14 14 C 1.46507 * 125.89588 * 180.22507 * 13 11 10 15 15 C 1.54266 * 110.03050 * 237.16623 * 14 13 11 16 16 C 1.54887 * 104.19342 * 217.10621 * 15 14 13 17 17 C 1.54889 * 102.75221 * 37.94212 * 16 15 14 18 18 C 1.53873 * 110.03048 * 120.00100 * 14 13 11 19 19 N 1.32897 * 126.08268 * 354.26625 * 9 7 2 20 20 H 0.97002 * 119.99511 * 0.02562 * 1 2 3 21 21 H 1.08004 * 126.08605 * 0.05321 * 10 9 7 22 22 H 0.96702 * 114.00672 * 269.70042 * 12 11 10 23 23 H 1.08996 * 110.01303 * 358.60388 * 14 13 11 24 24 H 1.09000 * 110.48667 * 335.78272 * 15 14 13 25 25 H 1.09001 * 110.48558 * 98.42393 * 15 14 13 26 26 H 1.09004 * 110.75292 * 279.62712 * 16 15 14 27 27 H 1.09005 * 110.75647 * 156.26329 * 16 15 14 28 28 H 1.08998 * 110.48358 * 203.38133 * 17 16 15 29 29 H 1.08999 * 110.59503 * 80.78895 * 17 16 15 30 30 H 1.09003 * 110.02953 * 238.56935 * 18 14 13 31 31 H 1.08996 * 110.03220 * 359.94695 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3853 2.1072 -1.3948 5 1 1.4972 2.6199 0.8026 6 1 3.5893 1.4120 0.5921 7 6 2.0081 -1.2110 -0.0005 8 1 3.0837 -1.2136 0.0975 9 6 1.3069 -2.4322 -0.1294 10 6 1.8876 -3.7190 -0.2547 11 6 0.8824 -4.6187 -0.3567 12 8 1.0253 -5.9614 -0.4941 13 7 -0.2984 -3.9420 -0.2917 14 6 -1.6349 -4.5383 -0.3586 15 6 -2.4339 -3.9151 -1.5218 16 6 -3.8810 -3.8164 -0.9786 17 6 -3.6637 -3.4228 0.5036 18 6 -2.4168 -4.2252 0.9292 19 7 -0.0139 -2.5780 -0.1498 20 1 -0.4849 0.8401 -0.0004 21 1 2.9444 -3.9414 -0.2680 22 1 1.0700 -6.2603 -1.4126 23 1 -1.5558 -5.6169 -0.4946 24 1 -2.0481 -2.9244 -1.7619 25 1 -2.3987 -4.5620 -2.3984 26 1 -4.3878 -4.7786 -1.0524 27 1 -4.4397 -3.0429 -1.5058 28 1 -4.5261 -3.7104 1.1050 29 1 -3.4773 -2.3526 0.5928 30 1 -2.7180 -5.1519 1.4177 31 1 -1.8015 -3.6305 1.6043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261205618.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:27 Heat of formation + Delta-G solvation = 18.745104 kcal Electronic energy + Delta-G solvation = -15301.049743 eV Core-core repulsion = 12776.801910 eV Total energy + Delta-G solvation = -2524.247833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56305 -37.20674 -36.09960 -33.18328 -30.78291 -28.28362 -27.60083 -27.04810 -24.92697 -20.80927 -20.32725 -19.67849 -18.89112 -17.77149 -15.85495 -15.44564 -15.14017 -14.65475 -14.21719 -13.25067 -12.97023 -12.82755 -12.66497 -12.37569 -11.66509 -11.21614 -10.98780 -10.76501 -10.73711 -10.70494 -10.56356 -10.39150 -10.22415 -10.11929 -9.89017 -9.11930 -8.32902 -7.53271 -7.03216 -6.32303 -4.24950 3.10899 3.17997 3.24578 3.28647 3.83576 4.18547 4.39121 4.90386 5.01963 5.10735 5.31192 5.64086 5.68522 5.83360 5.90783 5.97160 6.00421 6.22537 6.23702 6.37448 6.63471 6.68503 6.81741 6.91097 7.13386 7.27842 7.42900 7.61167 7.90676 8.47564 8.82786 8.98417 9.22134 9.91507 10.64635 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.009923 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.696724 B = 2821.150452 C = 3598.820178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.446 4.446 8 H 0.080 0.920 9 C 0.211 3.789 10 C -0.308 4.308 11 C 0.213 3.787 12 O -0.485 6.485 13 N -0.416 5.416 14 C 0.173 3.827 15 C -0.130 4.130 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.127 4.127 19 N -0.294 5.294 20 H 0.269 0.731 21 H 0.122 0.878 22 H 0.376 0.624 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.058 -6.145 -2.283 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.058 3.942 10 C -0.340 4.340 11 C 0.047 3.953 12 O -0.287 6.287 13 N -0.207 5.207 14 C 0.068 3.932 15 C -0.169 4.169 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.165 4.165 19 N -0.125 5.125 20 H 0.080 0.920 21 H 0.140 0.860 22 H 0.229 0.771 23 H 0.097 0.903 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.457 -5.662 -1.610 8.738 hybrid contribution 1.235 0.113 -0.604 1.379 sum -5.222 -5.550 -2.214 7.936 Atomic orbital electron populations 1.69960 1.06784 1.27474 1.36084 1.25776 0.94786 1.00423 0.93648 0.86345 0.80346 0.81608 0.78547 1.19991 1.20660 1.18902 1.18606 0.93939 0.88073 1.47951 0.90204 1.19232 0.89994 0.91811 0.93167 1.21130 0.97021 0.93401 1.22464 1.18962 0.87909 0.81389 1.07031 1.84805 1.94483 1.18470 1.30927 1.49718 1.02315 1.07184 1.61486 1.21357 0.80846 0.95516 0.95459 1.22719 0.94694 1.02900 0.96539 1.22416 0.96388 1.00522 0.96426 1.22270 0.96598 1.01221 0.95400 1.22422 0.96880 0.99711 0.97533 1.79023 1.14187 0.84245 1.35009 0.92021 0.86008 0.77131 0.90323 0.89124 0.92480 0.92151 0.91702 0.92454 0.90730 0.92402 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.79 11.96 55.54 0.66 -21.13 16 2 C 0.07 1.96 5.49 -17.35 -0.10 1.87 16 3 Si 0.91 19.92 29.56 -169.99 -5.03 14.90 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.45 -12.59 9.39 -37.78 -0.35 -12.95 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.21 5.99 6.75 -84.87 -0.57 5.42 16 10 C -0.31 -7.82 10.78 -39.30 -0.42 -8.24 16 11 C 0.21 4.95 7.96 -16.64 -0.13 4.82 16 12 O -0.49 -9.18 13.32 -18.87 -0.25 -9.43 16 13 N -0.42 -9.86 3.24 -53.78 -0.17 -10.04 16 14 C 0.17 3.28 3.75 -66.81 -0.25 3.03 16 15 C -0.13 -2.27 6.51 -25.07 -0.16 -2.43 16 16 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 17 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 18 C -0.13 -2.29 6.55 -25.61 -0.17 -2.46 16 19 N -0.29 -8.18 10.29 32.25 0.33 -7.85 16 20 H 0.27 6.97 8.30 -40.82 -0.34 6.63 16 21 H 0.12 2.85 8.06 -52.48 -0.42 2.42 16 22 H 0.38 5.10 9.06 45.56 0.41 5.51 16 23 H 0.08 1.34 7.80 -51.93 -0.41 0.94 16 24 H 0.09 1.93 7.69 -51.93 -0.40 1.53 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.73 7.85 -51.93 -0.41 1.32 16 LS Contribution 266.06 15.07 4.01 4.01 Total: -1.00 -31.66 266.06 -6.25 -37.91 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -3.30 Total: 6.52 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.50 Total: -14.88 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.82 Total: -39.02 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.25 Total: -9.43 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.66 -6.25 -37.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261205618.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.653 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds