Wall clock time and date at job start Mon Mar 30 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 H 1.08999 * 109.47387 * 305.63496 * 3 2 1 5 5 C 1.50700 * 109.46773 * 65.62984 * 3 2 1 6 6 H 1.08005 * 119.99990 * 29.19831 * 5 3 2 7 7 C 1.37878 * 120.00219 * 209.19956 * 5 3 2 8 8 N 1.31517 * 120.00218 * 6.81022 * 7 5 3 9 9 Si 1.86797 * 120.00042 * 186.81577 * 7 5 3 10 10 H 1.48507 * 109.47264 * 59.99937 * 9 7 5 11 11 H 1.48500 * 109.47050 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47413 * 299.99817 * 9 7 5 13 13 C 1.50696 * 109.47584 * 185.62919 * 3 2 1 14 14 C 1.38198 * 119.97530 * 299.73167 * 13 3 2 15 15 C 1.38149 * 120.11327 * 179.76216 * 14 13 3 16 16 C 1.38797 * 120.05234 * 0.51076 * 15 14 13 17 17 O 1.35896 * 120.02957 * 179.76843 * 16 15 14 18 18 C 1.38613 * 119.94355 * 359.73888 * 16 15 14 19 19 C 1.38655 * 119.89156 * 0.02562 * 18 16 15 20 20 O 1.35905 * 120.02578 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.46889 * 294.06067 * 1 2 3 22 22 H 1.09000 * 109.47647 * 54.06218 * 1 2 3 23 23 H 1.09001 * 109.47671 * 174.06621 * 1 2 3 24 24 H 1.09005 * 109.46792 * 240.00935 * 2 1 3 25 25 H 1.08993 * 109.47344 * 120.00519 * 2 1 3 26 26 H 0.96994 * 120.00476 * 180.02562 * 8 7 5 27 27 H 1.08008 * 119.94111 * 0.02562 * 14 13 3 28 28 H 1.07999 * 119.97396 * 180.24992 * 15 14 13 29 29 H 0.96708 * 113.99678 * 269.97502 * 17 16 15 30 30 H 1.08005 * 120.05110 * 180.02562 * 18 16 15 31 31 H 0.96698 * 114.00204 * 270.01845 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9847 -0.8352 5 6 1.6547 2.1114 1.2942 6 1 1.5460 1.5242 2.1942 7 6 1.4409 3.4731 1.3296 8 7 1.4410 4.1680 0.2130 9 14 1.1511 4.3310 2.9634 10 1 2.3299 4.1299 3.8440 11 1 0.9497 5.7837 2.7308 12 1 -0.0559 3.7614 3.6144 13 6 3.5405 1.4448 -0.1394 14 6 4.3233 0.8185 0.8119 15 6 5.6989 0.8147 0.6844 16 6 6.2987 1.4494 -0.3945 17 8 7.6521 1.4494 -0.5169 18 6 5.5160 2.0827 -1.3472 19 6 4.1353 2.0809 -1.2195 20 8 3.3654 2.7015 -2.1517 21 1 -0.3633 0.4190 0.9384 22 1 -0.3634 0.6031 -0.8320 23 1 -0.3634 -1.0221 -0.1062 24 1 1.8932 -0.5137 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.2910 5.1259 0.2378 27 1 3.8585 0.3275 1.6542 28 1 6.3082 0.3211 1.4270 29 1 8.0858 2.1998 -0.0880 30 1 5.9809 2.5768 -2.1876 31 1 3.1847 3.6313 -1.9570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:38 Heat of formation + Delta-G solvation = -100.822545 kcal Electronic energy + Delta-G solvation = -15279.105714 eV Core-core repulsion = 12717.380287 eV Total energy + Delta-G solvation = -2561.725427 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88884 -38.67751 -37.11511 -35.75877 -33.73493 -31.11789 -30.49271 -27.88047 -25.46780 -23.67648 -22.81214 -21.17669 -19.75496 -18.50487 -17.78903 -16.89593 -16.64952 -16.44817 -15.95556 -15.13676 -14.93378 -14.50572 -14.35958 -13.70816 -13.55003 -13.08619 -12.93709 -12.80361 -12.53700 -12.26385 -11.95605 -11.88041 -11.53414 -11.25050 -11.07457 -10.80433 -10.45197 -9.60802 -9.02379 -8.07299 -6.12477 0.46061 0.51864 1.43641 1.45184 1.50801 2.45264 2.73327 3.24502 3.35124 3.78306 4.10519 4.29061 4.35770 4.51277 4.69341 4.74822 4.80294 5.07661 5.16088 5.18067 5.28725 5.45580 5.49291 5.59006 5.66041 5.74170 5.84417 6.00581 6.12048 6.43786 6.88392 6.96502 7.03675 7.51010 9.00499 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.010714 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.971125 B = 2612.855317 C = 2953.378292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.063 3.937 4 H 0.041 0.959 5 C -0.506 4.506 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.941 3.059 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.274 1.274 13 C -0.079 4.079 14 C -0.095 4.095 15 C -0.156 4.156 16 C 0.091 3.909 17 O -0.503 6.503 18 C -0.183 4.183 19 C 0.095 3.905 20 O -0.504 6.504 21 H 0.047 0.953 22 H 0.033 0.967 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.260 0.740 27 H 0.128 0.872 28 H 0.147 0.853 29 H 0.405 0.595 30 H 0.134 0.866 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -3.068 0.895 7.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.044 3.956 4 H 0.059 0.941 5 C -0.544 4.544 6 H 0.071 0.929 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.768 3.232 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.199 1.199 13 C -0.080 4.080 14 C -0.113 4.113 15 C -0.174 4.174 16 C 0.047 3.953 17 O -0.315 6.315 18 C -0.202 4.202 19 C 0.051 3.949 20 O -0.316 6.316 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.164 0.836 29 H 0.263 0.737 30 H 0.152 0.848 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 6.516 -3.936 0.235 7.616 hybrid contribution -0.220 1.804 1.125 2.137 sum 6.296 -2.132 1.360 6.785 Atomic orbital electron populations 1.21521 0.95703 1.00118 1.01082 1.21483 0.96288 0.96988 0.99335 1.17909 0.86988 0.93002 0.97651 0.94098 1.21196 1.45717 0.92531 0.94907 0.92901 1.25567 0.95064 0.98465 0.98586 1.69971 1.50685 1.07300 1.27121 0.85878 0.78604 0.77389 0.81345 1.20042 1.21462 1.19935 1.21163 0.99596 0.95341 0.91896 1.20857 0.92837 0.99161 0.98457 1.21540 0.94892 1.02424 0.98579 1.18066 0.83232 0.99573 0.94467 1.84744 1.15021 1.52122 1.79658 1.21674 0.92867 1.04014 1.01657 1.18400 0.88838 0.97848 0.89840 1.84601 1.71289 1.29717 1.45951 0.93389 0.94739 0.92113 0.94486 0.92814 0.93094 0.85387 0.83576 0.73669 0.84818 0.74760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.64 71.98 0.69 -4.21 16 2 C -0.10 -4.30 5.12 30.59 0.16 -4.14 16 3 C 0.06 3.04 1.99 -12.29 -0.02 3.01 16 4 H 0.04 2.23 6.23 -2.39 -0.01 2.22 16 5 C -0.51 -25.85 7.03 25.60 0.18 -25.67 16 6 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 7 C 0.02 1.18 5.45 84.65 0.46 1.64 16 8 N -0.91 -49.05 12.85 21.45 0.28 -48.77 16 9 Si 0.94 41.79 29.54 68.60 2.03 43.82 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C -0.08 -3.54 4.79 -19.75 -0.09 -3.63 16 14 C -0.09 -3.74 8.86 22.24 0.20 -3.55 16 15 C -0.16 -5.30 9.98 22.38 0.22 -5.08 16 16 C 0.09 3.09 6.70 22.49 0.15 3.24 16 17 O -0.50 -13.87 13.50 -92.38 -1.25 -15.11 16 18 C -0.18 -6.86 9.93 22.46 0.22 -6.64 16 19 C 0.10 4.15 6.67 22.49 0.15 4.30 16 20 O -0.50 -22.36 12.26 -92.48 -1.13 -23.50 16 21 H 0.05 1.93 7.60 -2.39 -0.02 1.92 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 24 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.05 2.10 7.60 -2.39 -0.02 2.08 16 26 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 27 H 0.13 4.81 7.65 -2.91 -0.02 4.79 16 28 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 29 H 0.41 6.97 9.06 -74.05 -0.67 6.30 16 30 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 31 H 0.40 16.70 9.06 -74.06 -0.67 16.03 16 Total: -1.00 -59.04 269.52 2.04 -57.00 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.19 Total: 27.28 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 2.32 Total: -40.72 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.28 Total: -48.77 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -2.38 Total: -38.61 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -59.04 2.04 -57.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.822 kcal (2) G-P(sol) polarization free energy of solvation -59.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds