Wall clock time and date at job start Mon Mar 30 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00145 * 3 2 1 5 5 H 1.48500 * 109.47032 * 30.00119 * 3 2 1 6 6 H 1.48505 * 109.47247 * 150.00310 * 3 2 1 7 7 C 1.37881 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99738 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00268 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47338 * 180.02562 * 9 7 2 11 11 N 1.31127 * 126.55148 * 90.00110 * 10 9 7 12 12 C 1.34498 * 105.61513 * 180.02562 * 11 10 9 13 13 C 1.50703 * 126.28894 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46912 * 90.00309 * 13 12 11 15 15 C 1.53787 * 113.61239 * 272.49682 * 14 13 12 16 16 C 1.53781 * 87.07799 * 220.02294 * 15 14 13 17 17 C 1.53776 * 87.08649 * 25.43327 * 16 15 14 18 18 N 1.29955 * 107.42503 * 0.24307 * 12 11 10 19 19 O 1.21298 * 110.24419 * 359.57536 * 18 12 11 20 20 H 0.96996 * 119.99565 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46892 * 60.00019 * 9 7 2 22 22 H 1.09000 * 109.47288 * 300.00559 * 9 7 2 23 23 H 1.09002 * 109.47152 * 330.00081 * 13 12 11 24 24 H 1.09001 * 109.46980 * 210.00181 * 13 12 11 25 25 H 1.08992 * 112.85173 * 43.80262 * 14 13 12 26 26 H 1.08998 * 113.61082 * 334.56508 * 15 14 13 27 27 H 1.08997 * 113.61565 * 105.47270 * 15 14 13 28 28 H 1.09004 * 113.61390 * 270.87961 * 16 15 14 29 29 H 1.09003 * 113.61660 * 139.98542 * 16 15 14 30 30 H 1.08999 * 113.61671 * 220.02331 * 17 16 15 31 31 H 1.09001 * 113.69175 * 89.12786 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 7 2.7377 -4.2382 1.0528 12 6 3.5544 -5.1926 0.5722 13 6 4.3783 -6.1553 1.3880 14 6 3.5612 -7.4190 1.6642 15 6 2.6896 -7.3250 2.9278 16 6 3.0833 -8.7841 3.2124 17 6 4.3545 -8.5194 2.3886 18 7 3.5069 -5.1285 -0.7249 19 8 2.7478 -4.2492 -1.0741 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 4.6542 -5.6872 2.3330 24 1 5.2806 -6.4193 0.8364 25 1 3.0226 -7.7751 0.7862 26 1 3.0673 -6.6188 3.6671 27 1 1.6284 -7.1922 2.7173 28 1 2.4128 -9.5138 2.7584 29 1 3.2795 -8.9860 4.2654 30 1 4.6374 -9.3507 1.7428 31 1 5.1881 -8.1398 2.9795 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379515402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:54 Heat of formation + Delta-G solvation = 64.390143 kcal Electronic energy + Delta-G solvation = -14563.452422 eV Core-core repulsion = 12041.183906 eV Total energy + Delta-G solvation = -2522.268516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.69506 -38.94315 -35.17472 -33.89059 -32.16485 -29.78713 -28.30323 -25.63591 -24.06404 -23.94580 -22.24071 -20.33416 -19.40475 -17.41620 -16.67076 -16.24642 -15.56836 -14.87989 -14.74488 -14.08457 -13.52146 -13.01082 -12.47837 -12.47321 -12.24651 -11.96416 -11.53394 -11.29451 -11.07080 -10.96924 -10.77329 -10.53905 -10.33308 -10.26890 -10.20113 -10.02493 -9.76169 -8.87433 -8.61103 -6.24569 -4.30075 2.01632 3.03555 3.24478 3.30754 3.35732 3.85097 4.21753 4.33403 4.53080 4.65857 4.75617 4.77835 4.98081 5.14144 5.38219 5.48795 5.64419 5.71287 5.74668 5.82035 5.87135 6.06156 6.16803 6.23026 6.46997 6.65625 6.76180 7.13439 7.21264 7.69090 7.93108 8.70210 9.01630 9.34718 10.85920 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.050629 B = 0.005536 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.905084 B = 5056.553828 C = 5157.832984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.101 3.899 10 C 0.235 3.765 11 N -0.505 5.505 12 C 0.161 3.839 13 C -0.014 4.014 14 C -0.105 4.105 15 C -0.131 4.131 16 C -0.143 4.143 17 C -0.134 4.134 18 N -0.413 5.413 19 O 0.057 5.943 20 H 0.268 0.732 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -12.720 4.083 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.062 3.938 10 C 0.017 3.983 11 N -0.239 5.239 12 C -0.112 4.112 13 C -0.053 4.053 14 C -0.124 4.124 15 C -0.169 4.169 16 C -0.181 4.181 17 C -0.171 4.171 18 N -0.127 5.127 19 O 0.003 5.997 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.842 -13.184 3.991 14.963 hybrid contribution 0.314 1.089 -0.109 1.138 sum 6.156 -12.096 3.882 14.116 Atomic orbital electron populations 1.69924 1.06038 1.27592 1.49024 1.24924 0.94987 0.99431 0.94355 0.86353 0.79732 0.82220 0.78386 1.20270 1.20849 1.19688 1.20800 0.93239 0.88895 1.53286 0.92094 1.18186 0.89890 0.84578 1.01120 1.30142 0.94520 0.94582 0.79023 1.71947 1.13358 1.09297 1.29289 1.25686 0.99057 0.97712 0.88710 1.19863 0.95613 0.91349 0.98427 1.22514 0.97619 0.94209 0.98069 1.22952 1.00257 0.96395 0.97279 1.22813 0.97774 0.97412 1.00082 1.22937 0.97141 0.98221 0.98823 1.74493 1.13064 1.09461 1.15681 1.85240 1.42956 1.34779 1.36686 0.92276 0.92474 0.91392 0.89053 0.89677 0.89319 0.89619 0.91542 0.90434 0.91498 0.91536 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 13.29 55.43 0.74 -24.05 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.20 9.09 -34.44 -0.31 -14.51 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 9 C 0.10 2.51 5.60 -29.04 -0.16 2.34 16 10 C 0.24 5.42 7.70 -13.06 -0.10 5.32 16 11 N -0.50 -11.16 11.55 -9.87 -0.11 -11.27 16 12 C 0.16 3.14 7.46 -156.36 -1.17 1.98 16 13 C -0.01 -0.20 5.68 -27.88 -0.16 -0.35 16 14 C -0.10 -1.31 3.64 -89.80 -0.33 -1.64 16 15 C -0.13 -1.60 7.63 -25.92 -0.20 -1.79 16 16 C -0.14 -1.39 8.08 -25.92 -0.21 -1.60 16 17 C -0.13 -1.30 7.64 -25.92 -0.20 -1.50 16 18 N -0.41 -8.62 12.16 30.90 0.38 -8.24 16 19 O 0.06 1.27 11.31 18.10 0.20 1.47 16 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 21 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 22 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 23 H 0.09 1.24 7.84 -51.93 -0.41 0.83 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.09 1.21 8.12 -51.93 -0.42 0.79 16 26 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -28.56 272.15 -6.81 -35.37 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.16 Total: -3.15 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.93 Total: -10.06 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 1.00 Total: -43.56 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.56 -6.81 -35.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379515402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.760 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds