Wall clock time and date at job start Mon Mar 30 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00145 * 3 2 1 5 5 H 1.48500 * 109.47032 * 30.00119 * 3 2 1 6 6 H 1.48505 * 109.47247 * 150.00310 * 3 2 1 7 7 C 1.37881 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99738 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00268 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47338 * 180.02562 * 9 7 2 11 11 N 1.31127 * 126.55148 * 90.00110 * 10 9 7 12 12 C 1.34498 * 105.61513 * 180.02562 * 11 10 9 13 13 C 1.50703 * 126.28894 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46912 * 90.00309 * 13 12 11 15 15 C 1.53787 * 113.61239 * 272.49682 * 14 13 12 16 16 C 1.53781 * 87.07799 * 220.02294 * 15 14 13 17 17 C 1.53776 * 87.08649 * 25.43327 * 16 15 14 18 18 N 1.29955 * 107.42503 * 0.24307 * 12 11 10 19 19 O 1.21298 * 110.24419 * 359.57536 * 18 12 11 20 20 H 0.96996 * 119.99565 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46892 * 60.00019 * 9 7 2 22 22 H 1.09000 * 109.47288 * 300.00559 * 9 7 2 23 23 H 1.09002 * 109.47152 * 330.00081 * 13 12 11 24 24 H 1.09001 * 109.46980 * 210.00181 * 13 12 11 25 25 H 1.08992 * 112.85173 * 43.80262 * 14 13 12 26 26 H 1.08998 * 113.61082 * 334.56508 * 15 14 13 27 27 H 1.08997 * 113.61565 * 105.47270 * 15 14 13 28 28 H 1.09004 * 113.61390 * 270.87961 * 16 15 14 29 29 H 1.09003 * 113.61660 * 139.98542 * 16 15 14 30 30 H 1.08999 * 113.61671 * 220.02331 * 17 16 15 31 31 H 1.09001 * 113.69175 * 89.12786 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 7 2.7377 -4.2382 1.0528 12 6 3.5544 -5.1926 0.5722 13 6 4.3783 -6.1553 1.3880 14 6 3.5612 -7.4190 1.6642 15 6 2.6896 -7.3250 2.9278 16 6 3.0833 -8.7841 3.2124 17 6 4.3545 -8.5194 2.3886 18 7 3.5069 -5.1285 -0.7249 19 8 2.7478 -4.2492 -1.0741 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 4.6542 -5.6872 2.3330 24 1 5.2806 -6.4193 0.8364 25 1 3.0226 -7.7751 0.7862 26 1 3.0673 -6.6188 3.6671 27 1 1.6284 -7.1922 2.7173 28 1 2.4128 -9.5138 2.7584 29 1 3.2795 -8.9860 4.2654 30 1 4.6374 -9.3507 1.7428 31 1 5.1881 -8.1398 2.9795 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379515402.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:54 Heat of formation + Delta-G solvation = 47.251698 kcal Electronic energy + Delta-G solvation = -14564.195600 eV Core-core repulsion = 12041.183906 eV Total energy + Delta-G solvation = -2523.011695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.39130 -39.87244 -36.84151 -35.80984 -33.97400 -31.18855 -30.13489 -26.49693 -26.00545 -25.21749 -23.81032 -21.91433 -20.32607 -19.21958 -18.37307 -18.17924 -16.76222 -16.56671 -15.69537 -15.56845 -15.04405 -14.47243 -14.28189 -14.01596 -13.32018 -13.23346 -13.09016 -12.90206 -12.62436 -12.54769 -12.31244 -12.13384 -11.90388 -11.83713 -11.46796 -11.22019 -11.11001 -10.68011 -10.59683 -8.31753 -6.45376 0.26748 1.35622 1.43868 1.44969 1.55735 2.04285 2.39365 2.82052 3.02965 3.19324 3.71259 3.75616 3.80729 3.99709 4.19080 4.43030 4.58049 4.64392 4.82842 4.88886 4.90829 5.01252 5.02794 5.09678 5.11178 5.13627 5.24128 5.36123 5.57855 5.59180 5.87110 6.59000 7.23546 7.28364 8.79247 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.050629 B = 0.005536 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.905084 B = 5056.553828 C = 5157.832984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.110 3.890 10 C 0.227 3.773 11 N -0.517 5.517 12 C 0.171 3.829 13 C -0.014 4.014 14 C -0.110 4.110 15 C -0.141 4.141 16 C -0.134 4.134 17 C -0.119 4.119 18 N -0.421 5.421 19 O 0.045 5.955 20 H 0.273 0.727 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 -13.310 4.811 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.071 0.929 9 C 0.071 3.929 10 C 0.008 3.992 11 N -0.251 5.251 12 C -0.102 4.102 13 C -0.053 4.053 14 C -0.130 4.130 15 C -0.179 4.179 16 C -0.171 4.171 17 C -0.156 4.156 18 N -0.137 5.137 19 O -0.005 6.005 20 H 0.082 0.918 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.121 0.879 24 H 0.123 0.877 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.307 -13.777 4.698 16.288 hybrid contribution -0.154 1.207 -0.316 1.257 sum 7.153 -12.571 4.382 15.113 Atomic orbital electron populations 1.70007 1.07344 1.28803 1.49264 1.25746 0.95828 1.02714 0.93585 0.85347 0.78366 0.77995 0.78770 1.19337 1.19884 1.19600 1.21017 0.93043 0.90236 1.54033 0.92928 1.17888 0.89998 0.84877 1.00134 1.29750 0.94937 0.94755 0.79774 1.71956 1.13919 1.10022 1.29252 1.26582 0.97958 0.97050 0.88577 1.20205 0.95757 0.90970 0.98350 1.22547 0.98271 0.94361 0.97825 1.23015 0.99022 0.98517 0.97314 1.22785 0.97663 0.95479 1.01199 1.22909 0.97213 0.97123 0.98353 1.74487 1.13321 1.09441 1.16481 1.85226 1.43445 1.35239 1.36598 0.91777 0.93051 0.92744 0.87874 0.87690 0.90728 0.89717 0.93512 0.89995 0.89935 0.90219 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 13.29 21.45 0.28 -51.07 16 2 C 0.02 1.19 5.46 84.66 0.46 1.65 16 3 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -29.97 9.09 25.60 0.23 -29.73 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.11 5.61 5.60 29.10 0.16 5.78 16 10 C 0.23 10.64 7.70 88.38 0.68 11.32 16 11 N -0.52 -22.92 11.55 -303.20 -3.50 -26.43 16 12 C 0.17 6.56 7.46 138.46 1.03 7.60 16 13 C -0.01 -0.38 5.68 29.85 0.17 -0.21 16 14 C -0.11 -2.58 3.64 -10.26 -0.04 -2.61 16 15 C -0.14 -3.26 7.63 31.12 0.24 -3.02 16 16 C -0.13 -2.25 8.08 31.12 0.25 -2.00 16 17 C -0.12 -1.92 7.64 31.12 0.24 -1.68 16 18 N -0.42 -17.45 12.16 -60.31 -0.73 -18.19 16 19 O 0.04 2.01 11.31 74.83 0.85 2.86 16 20 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 21 H 0.05 2.64 8.14 -2.38 -0.02 2.62 16 22 H 0.05 2.89 8.14 -2.39 -0.02 2.87 16 23 H 0.10 2.55 7.84 -2.39 -0.02 2.53 16 24 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 26 H 0.08 1.96 7.90 -2.39 -0.02 1.94 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -60.39 272.15 3.47 -56.93 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.12 Total: 4.41 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.43 Total: -12.91 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -3.95 Total: -95.69 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.85 Total: 2.86 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.39 3.47 -56.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379515402.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.177 kcal (2) G-P(sol) polarization free energy of solvation -60.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds