Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 115.56411 * 2 1 4 4 C 1.53007 * 117.49766 * 214.31339 * 2 1 3 5 5 C 1.52999 * 59.99966 * 252.50837 * 4 2 1 6 6 C 1.53001 * 117.51818 * 252.51709 * 5 4 2 7 7 C 1.50703 * 117.50012 * 107.48701 * 5 4 2 8 8 N 1.30454 * 126.07267 * 291.40560 * 7 5 4 9 9 O 1.21279 * 110.68025 * 179.73549 * 8 7 5 10 10 C 1.34744 * 109.54007 * 359.97438 * 9 8 7 11 11 C 1.40336 * 126.79741 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00179 * 179.97438 * 11 10 9 13 13 C 1.40462 * 120.00042 * 359.97438 * 11 10 9 14 14 N 1.30507 * 119.99786 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46964 * 90.00505 * 15 13 11 17 17 H 1.48504 * 109.47065 * 210.00143 * 15 13 11 18 18 H 1.48498 * 109.47213 * 330.00132 * 15 13 11 19 19 N 1.33333 * 106.40947 * 0.02562 * 10 9 8 20 20 H 1.09007 * 109.47038 * 274.31265 * 1 2 3 21 21 H 1.09001 * 109.47037 * 34.30618 * 1 2 3 22 22 H 1.09000 * 109.47302 * 154.30882 * 1 2 3 23 23 H 1.09006 * 109.47488 * 205.69147 * 3 2 1 24 24 H 1.09003 * 109.47513 * 325.68982 * 3 2 1 25 25 H 1.08997 * 109.46924 * 85.69022 * 3 2 1 26 26 H 1.08995 * 117.49811 * 145.02046 * 4 2 1 27 27 H 1.08997 * 117.49322 * 359.97438 * 4 2 1 28 28 H 1.08996 * 109.47141 * 248.71322 * 6 5 4 29 29 H 1.08999 * 109.46996 * 8.71514 * 6 5 4 30 30 H 1.09000 * 109.46763 * 128.71705 * 6 5 4 31 31 H 0.97000 * 119.99788 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1210 0.7649 6 6 3.5487 -0.7759 1.4718 7 6 1.3720 -2.1407 1.4608 8 7 0.0677 -2.1610 1.4742 9 8 -0.3394 -3.1075 2.1139 10 6 0.7055 -3.8124 2.5902 11 6 0.6479 -4.9739 3.3758 12 1 1.5603 -5.4531 3.6989 13 6 -0.5963 -5.5131 3.7419 14 7 -1.6988 -4.9343 3.3510 15 14 -0.6730 -7.0595 4.7869 16 1 -0.6919 -6.6853 6.2239 17 1 -1.9056 -7.8193 4.4571 18 1 0.5174 -7.9032 4.5107 19 7 1.8052 -3.1875 2.1682 20 1 -0.3633 0.0773 1.0248 21 1 -0.3633 0.8489 -0.5792 22 1 -0.3634 -0.9261 -0.4455 23 1 3.1824 1.3084 -0.4455 24 1 1.5812 2.0743 -0.5793 25 1 2.2773 1.7413 1.0247 26 1 3.1714 -0.8752 -1.2684 27 1 1.6111 -1.8586 -1.2680 28 1 3.9372 -1.6638 1.9705 29 1 4.2746 -0.4240 0.7387 30 1 3.3692 0.0060 2.2097 31 1 -2.5580 -5.3069 3.6035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606263508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = 63.708561 kcal Electronic energy + Delta-G solvation = -15242.510229 eV Core-core repulsion = 12720.212158 eV Total energy + Delta-G solvation = -2522.298072 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.96894 -38.57798 -34.07413 -33.29198 -30.40720 -29.89225 -27.71797 -26.53530 -26.20452 -22.74277 -21.34366 -20.05215 -18.65253 -16.72519 -15.71754 -15.40671 -15.03269 -14.38472 -13.98207 -13.56643 -13.16917 -12.76715 -12.11382 -12.00808 -11.78237 -11.60696 -11.59287 -11.46098 -11.42614 -11.11681 -10.66995 -10.50445 -10.14362 -9.92535 -9.82987 -9.24495 -9.04142 -8.67303 -8.09873 -7.05514 -4.97948 2.80960 2.97302 3.03197 3.27856 3.75225 3.78828 4.31613 4.82951 5.04139 5.05556 5.21895 5.40565 5.46271 5.50116 5.88243 5.92805 6.07332 6.15398 6.18214 6.21645 6.27945 6.42165 6.49494 6.54500 6.61449 6.86077 6.91062 6.99446 7.49675 7.94361 8.16553 8.37378 8.51563 9.93907 10.46118 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.059479 B = 0.007225 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.639942 B = 3874.294008 C = 4174.705203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.158 4.158 5 C -0.022 4.022 6 C -0.102 4.102 7 C 0.196 3.804 8 N -0.463 5.463 9 O 0.041 5.959 10 C 0.302 3.698 11 C -0.418 4.418 12 H 0.111 0.889 13 C 0.071 3.929 14 N -0.765 5.765 15 Si 0.935 3.065 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.257 1.257 19 N -0.610 5.610 20 H 0.066 0.934 21 H 0.042 0.958 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.510 4.819 -2.916 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.166 4.166 4 C -0.196 4.196 5 C -0.024 4.024 6 C -0.160 4.160 7 C -0.077 4.077 8 N -0.193 5.193 9 O -0.005 6.005 10 C 0.111 3.889 11 C -0.456 4.456 12 H 0.129 0.871 13 C -0.154 4.154 14 N -0.393 5.393 15 Si 0.758 3.242 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.180 1.180 19 N -0.353 5.353 20 H 0.085 0.915 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.215 5.408 -3.310 7.109 hybrid contribution -0.233 -0.942 0.562 1.121 sum 2.982 4.466 -2.748 6.032 Atomic orbital electron populations 1.21301 0.91055 1.00917 1.02444 1.21699 0.95722 0.90537 1.03553 1.21308 0.99538 0.94122 1.01629 1.23337 1.01981 1.01277 0.93048 1.19133 0.95756 0.95714 0.91799 1.21178 0.93354 1.01988 0.99447 1.23813 0.89076 0.95649 0.99164 1.74435 1.12932 1.10661 1.21264 1.85547 1.34177 1.28912 1.51837 1.24208 0.79390 0.93393 0.91921 1.18544 0.94789 1.04812 1.27425 0.87088 1.26180 0.94589 0.99321 0.95273 1.69638 0.99268 1.36738 1.33623 0.85854 0.79190 0.79483 0.79674 1.18902 1.19757 1.18014 1.72153 1.27426 1.10921 1.24846 0.91512 0.93866 0.91744 0.92637 0.92371 0.92340 0.88723 0.89124 0.90769 0.92713 0.92706 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 8.11 37.15 0.30 -1.54 16 2 C -0.11 -1.97 2.70 -154.51 -0.42 -2.39 16 3 C -0.11 -1.46 8.88 37.16 0.33 -1.13 16 4 C -0.16 -2.75 9.17 -26.73 -0.25 -3.00 16 5 C -0.02 -0.45 2.65 -155.66 -0.41 -0.86 16 6 C -0.10 -1.78 8.86 37.16 0.33 -1.45 16 7 C 0.20 5.03 7.28 -156.78 -1.14 3.89 16 8 N -0.46 -12.56 8.63 31.51 0.27 -12.29 16 9 O 0.04 1.21 9.74 15.16 0.15 1.36 16 10 C 0.30 8.72 7.81 -16.35 -0.13 8.59 16 11 C -0.42 -11.19 9.48 -37.96 -0.36 -11.55 16 12 H 0.11 2.81 7.85 -52.49 -0.41 2.40 16 13 C 0.07 1.74 5.50 -17.28 -0.10 1.64 16 14 N -0.77 -19.69 12.06 55.57 0.67 -19.02 16 15 Si 0.94 17.78 29.56 -169.99 -5.03 12.76 16 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 17 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 N -0.61 -17.01 11.24 -11.51 -0.13 -17.14 16 20 H 0.07 1.37 7.31 -51.92 -0.38 0.99 16 21 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 22 H 0.06 1.31 7.07 -51.93 -0.37 0.95 16 23 H 0.05 0.66 7.77 -51.93 -0.40 0.25 16 24 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 25 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 26 H 0.09 1.37 7.96 -51.93 -0.41 0.96 16 27 H 0.09 1.69 8.05 -51.93 -0.42 1.28 16 28 H 0.07 1.42 7.77 -51.93 -0.40 1.02 16 29 H 0.05 0.78 7.77 -51.93 -0.40 0.37 16 30 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 31 H 0.29 6.63 8.29 -40.82 -0.34 6.29 16 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -29.87 264.75 -5.90 -35.77 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.99 Total: 2.36 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.84 Total: -7.80 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.81 Total: -48.44 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.15 Total: 1.36 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.87 -5.90 -35.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606263508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.482 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds