Wall clock time and date at job start Mon Mar 30 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 115.56411 * 2 1 4 4 C 1.53007 * 117.49766 * 214.31339 * 2 1 3 5 5 C 1.52999 * 59.99966 * 252.50837 * 4 2 1 6 6 C 1.53001 * 117.51818 * 252.51709 * 5 4 2 7 7 C 1.50703 * 117.50012 * 107.48701 * 5 4 2 8 8 N 1.30454 * 126.07267 * 291.40560 * 7 5 4 9 9 O 1.21279 * 110.68025 * 179.73549 * 8 7 5 10 10 C 1.34744 * 109.54007 * 359.97438 * 9 8 7 11 11 C 1.40336 * 126.79741 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00179 * 179.97438 * 11 10 9 13 13 C 1.40462 * 120.00042 * 359.97438 * 11 10 9 14 14 N 1.30507 * 119.99786 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46964 * 90.00505 * 15 13 11 17 17 H 1.48504 * 109.47065 * 210.00143 * 15 13 11 18 18 H 1.48498 * 109.47213 * 330.00132 * 15 13 11 19 19 N 1.33333 * 106.40947 * 0.02562 * 10 9 8 20 20 H 1.09007 * 109.47038 * 274.31265 * 1 2 3 21 21 H 1.09001 * 109.47037 * 34.30618 * 1 2 3 22 22 H 1.09000 * 109.47302 * 154.30882 * 1 2 3 23 23 H 1.09006 * 109.47488 * 205.69147 * 3 2 1 24 24 H 1.09003 * 109.47513 * 325.68982 * 3 2 1 25 25 H 1.08997 * 109.46924 * 85.69022 * 3 2 1 26 26 H 1.08995 * 117.49811 * 145.02046 * 4 2 1 27 27 H 1.08997 * 117.49322 * 359.97438 * 4 2 1 28 28 H 1.08996 * 109.47141 * 248.71322 * 6 5 4 29 29 H 1.08999 * 109.46996 * 8.71514 * 6 5 4 30 30 H 1.09000 * 109.46763 * 128.71705 * 6 5 4 31 31 H 0.97000 * 119.99788 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1210 0.7649 6 6 3.5487 -0.7759 1.4718 7 6 1.3720 -2.1407 1.4608 8 7 0.0677 -2.1610 1.4742 9 8 -0.3394 -3.1075 2.1139 10 6 0.7055 -3.8124 2.5902 11 6 0.6479 -4.9739 3.3758 12 1 1.5603 -5.4531 3.6989 13 6 -0.5963 -5.5131 3.7419 14 7 -1.6988 -4.9343 3.3510 15 14 -0.6730 -7.0595 4.7869 16 1 -0.6919 -6.6853 6.2239 17 1 -1.9056 -7.8193 4.4571 18 1 0.5174 -7.9032 4.5107 19 7 1.8052 -3.1875 2.1682 20 1 -0.3633 0.0773 1.0248 21 1 -0.3633 0.8489 -0.5792 22 1 -0.3634 -0.9261 -0.4455 23 1 3.1824 1.3084 -0.4455 24 1 1.5812 2.0743 -0.5793 25 1 2.2773 1.7413 1.0247 26 1 3.1714 -0.8752 -1.2684 27 1 1.6111 -1.8586 -1.2680 28 1 3.9372 -1.6638 1.9705 29 1 4.2746 -0.4240 0.7387 30 1 3.3692 0.0060 2.2097 31 1 -2.5580 -5.3069 3.6035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606263508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:13 Heat of formation + Delta-G solvation = 44.053497 kcal Electronic energy + Delta-G solvation = -15243.362537 eV Core-core repulsion = 12720.212158 eV Total energy + Delta-G solvation = -2523.150379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.00612 -40.02155 -36.06301 -35.29387 -32.33843 -31.39182 -29.04569 -28.32214 -27.76348 -24.55929 -23.38745 -21.65780 -20.36790 -18.44632 -17.80498 -17.31472 -16.77250 -16.06719 -15.44753 -14.95242 -14.70392 -14.10260 -13.78531 -13.56934 -13.39235 -13.11553 -13.09270 -12.94995 -12.90880 -12.56411 -12.20520 -11.99906 -11.91162 -11.87780 -11.57733 -10.97973 -10.82878 -10.39727 -10.01507 -8.95608 -7.08216 1.00200 1.39192 1.53173 1.59559 1.98511 2.14421 2.76146 3.04283 3.18126 3.43462 3.63336 3.81264 3.98679 4.20187 4.41866 4.68456 4.76565 4.80558 4.84522 4.89653 4.93242 4.99272 5.06100 5.08929 5.13536 5.28706 5.39871 5.52406 5.64894 5.88440 6.11089 6.32480 6.46490 8.06995 8.36090 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.059479 B = 0.007225 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.639942 B = 3874.294008 C = 4174.705203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.101 4.101 3 C -0.104 4.104 4 C -0.143 4.143 5 C -0.064 4.064 6 C -0.092 4.092 7 C 0.201 3.799 8 N -0.482 5.482 9 O 0.005 5.995 10 C 0.269 3.731 11 C -0.438 4.438 12 H 0.119 0.881 13 C 0.028 3.972 14 N -0.798 5.798 15 Si 1.022 2.978 16 H -0.253 1.253 17 H -0.258 1.258 18 H -0.249 1.249 19 N -0.637 5.637 20 H 0.037 0.963 21 H 0.077 0.923 22 H 0.034 0.966 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.136 0.864 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 5.157 -3.102 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.160 4.160 4 C -0.181 4.181 5 C -0.066 4.066 6 C -0.149 4.149 7 C -0.073 4.073 8 N -0.217 5.217 9 O -0.035 6.035 10 C 0.080 3.920 11 C -0.475 4.475 12 H 0.137 0.863 13 C -0.193 4.193 14 N -0.425 5.425 15 Si 0.838 3.162 16 H -0.177 1.177 17 H -0.182 1.182 18 H -0.172 1.172 19 N -0.381 5.381 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.207 5.745 -3.494 7.932 hybrid contribution -0.598 -1.038 0.591 1.336 sum 3.610 4.707 -2.903 6.604 Atomic orbital electron populations 1.21235 0.92570 1.00829 1.00866 1.21887 0.94787 0.92235 1.01244 1.21350 1.00819 0.91412 1.02455 1.23428 1.03305 1.00532 0.90819 1.19597 0.96937 0.96625 0.93455 1.21137 0.92590 1.00961 1.00250 1.24807 0.89240 0.95629 0.97642 1.74412 1.13951 1.10850 1.22536 1.85487 1.34924 1.29965 1.53174 1.24844 0.79829 0.94459 0.92904 1.19094 0.96497 1.04582 1.27351 0.86306 1.27392 0.93064 1.02863 0.95991 1.69701 1.00450 1.38467 1.33890 0.84616 0.79880 0.74140 0.77532 1.17717 1.18234 1.17179 1.72146 1.27505 1.12164 1.26322 0.94387 0.90398 0.94726 0.90122 0.90358 0.92203 0.84647 0.91367 0.93474 0.88684 0.92201 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.60 8.11 71.98 0.58 -3.02 16 2 C -0.10 -3.30 2.70 -52.18 -0.14 -3.44 16 3 C -0.10 -2.36 8.88 71.98 0.64 -1.72 16 4 C -0.14 -4.71 9.17 30.60 0.28 -4.43 16 5 C -0.06 -2.56 2.65 -52.93 -0.14 -2.70 16 6 C -0.09 -3.05 8.86 71.98 0.64 -2.41 16 7 C 0.20 10.68 7.28 138.61 1.01 11.68 16 8 N -0.48 -27.60 8.63 -56.63 -0.49 -28.09 16 9 O 0.00 0.31 9.74 64.31 0.63 0.93 16 10 C 0.27 16.27 7.81 85.06 0.66 16.94 16 11 C -0.44 -24.15 9.48 23.32 0.22 -23.92 16 12 H 0.12 6.14 7.85 -2.91 -0.02 6.12 16 13 C 0.03 1.40 5.50 85.43 0.47 1.87 16 14 N -0.80 -41.85 12.06 21.91 0.26 -41.59 16 15 Si 1.02 35.57 29.56 68.60 2.03 37.60 16 16 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 17 H -0.26 -8.36 7.11 99.48 0.71 -7.65 16 18 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 19 N -0.64 -37.07 11.24 -305.24 -3.43 -40.50 16 20 H 0.04 1.60 7.31 -2.38 -0.02 1.58 16 21 H 0.08 2.26 7.92 -2.39 -0.02 2.24 16 22 H 0.03 1.45 7.07 -2.39 -0.02 1.43 16 23 H 0.08 1.47 7.77 -2.38 -0.02 1.45 16 24 H 0.08 1.50 7.92 -2.39 -0.02 1.48 16 25 H 0.06 1.38 8.02 -2.39 -0.02 1.36 16 26 H 0.14 3.33 7.96 -2.39 -0.02 3.32 16 27 H 0.07 2.55 8.05 -2.39 -0.02 2.53 16 28 H 0.05 1.79 7.77 -2.39 -0.02 1.78 16 29 H 0.09 2.33 7.77 -2.39 -0.02 2.31 16 30 H 0.06 1.87 8.02 -2.39 -0.02 1.85 16 31 H 0.30 13.94 8.29 -92.71 -0.77 13.17 16 Total: -1.00 -69.43 264.75 4.35 -65.08 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.13 Total: 17.72 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.23 Total: -11.15 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -3.66 Total: -110.18 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: 0.63 Total: 0.93 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -69.43 4.35 -65.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606263508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.132 kcal (2) G-P(sol) polarization free energy of solvation -69.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds