Wall clock time and date at job start Mon Mar 30 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 O 1.42900 * 109.47108 * 119.99677 * 2 1 3 5 5 C 1.35709 * 117.00177 * 150.00045 * 4 2 1 6 6 N 1.32128 * 119.73786 * 0.02562 * 5 4 2 7 7 C 1.32022 * 121.73303 * 180.02562 * 6 5 4 8 8 C 1.38148 * 121.02373 * 359.97438 * 7 6 5 9 9 C 1.38651 * 119.37314 * 0.28073 * 8 7 6 10 10 C 1.39202 * 118.40618 * 359.50099 * 9 8 7 11 11 N 1.39400 * 120.52900 * 180.22587 * 10 9 8 12 12 C 1.36804 * 119.99863 * 0.25017 * 11 10 9 13 13 H 1.07996 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.38775 * 119.99976 * 180.02562 * 12 11 10 15 15 N 1.31607 * 119.99917 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99866 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46997 * 60.00176 * 16 14 12 18 18 H 1.48502 * 109.47024 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47098 * 300.00078 * 16 14 12 20 20 H 1.08999 * 109.47075 * 300.00111 * 1 2 3 21 21 H 1.09003 * 109.46771 * 60.00260 * 1 2 3 22 22 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47075 * 239.99889 * 2 1 3 24 24 H 1.08994 * 109.47131 * 299.99753 * 3 2 1 25 25 H 1.09005 * 109.47252 * 59.99572 * 3 2 1 26 26 H 1.08994 * 109.47032 * 179.97438 * 3 2 1 27 27 H 1.07999 * 119.48241 * 179.97438 * 7 6 5 28 28 H 1.08002 * 120.30889 * 179.97438 * 8 7 6 29 29 H 1.08000 * 120.79383 * 179.74766 * 9 8 7 30 30 H 0.97001 * 120.00511 * 180.25719 * 11 10 9 31 31 H 0.97000 * 120.00192 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1990 -1.3131 1.0654 6 7 3.8598 -1.2900 -0.0786 7 6 5.0225 -1.8989 -0.2212 8 6 5.5985 -2.5888 0.8280 9 6 4.9404 -2.6459 2.0471 10 6 3.7183 -1.9911 2.1712 11 7 3.0211 -2.0158 3.3781 12 6 3.5396 -2.6830 4.4540 13 1 4.4892 -3.1902 4.3684 14 6 2.8453 -2.7081 5.6553 15 7 1.6879 -2.0904 5.7594 16 14 3.5537 -3.6185 7.1246 17 1 4.8698 -3.0316 7.4831 18 1 2.6257 -3.4955 8.2775 19 1 3.7282 -5.0527 6.7811 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 0.0005 27 1 5.5312 -1.8570 -1.1730 28 1 6.5500 -3.0831 0.6984 29 1 5.3678 -3.1822 2.8815 30 1 2.1683 -1.5601 3.4551 31 1 1.2024 -2.1082 6.5990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042392308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:01 Heat of formation + Delta-G solvation = -8.818504 kcal Electronic energy + Delta-G solvation = -14999.571200 eV Core-core repulsion = 12474.128118 eV Total energy + Delta-G solvation = -2525.443081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58737 -37.30005 -35.47231 -32.66832 -32.08864 -30.19963 -27.95160 -26.90019 -24.93532 -22.77609 -21.51160 -20.36508 -18.09726 -17.37255 -16.43080 -15.34815 -14.89775 -14.47497 -14.32014 -13.89170 -13.30662 -13.19494 -12.70808 -12.23188 -11.97806 -11.83983 -11.71838 -11.53148 -11.35407 -11.15997 -10.66794 -10.57577 -10.42914 -10.24378 -10.12077 -8.96697 -8.61045 -8.19755 -6.62870 -6.62773 -3.75648 2.37011 2.45776 3.12761 3.14715 3.14806 3.89953 3.98927 4.71559 5.11024 5.17414 5.28393 5.42098 5.54201 5.65902 5.82939 5.87528 5.95686 6.06774 6.18647 6.21904 6.45309 6.49838 6.57486 6.68396 6.98047 7.14171 7.35072 7.55735 7.69566 8.32142 8.67883 9.00179 9.28654 9.48377 10.52487 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.008784 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.587851 B = 3186.779094 C = 4043.611738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.088 3.912 3 C -0.165 4.165 4 O -0.310 6.310 5 C 0.209 3.791 6 N -0.495 5.495 7 C -0.027 4.027 8 C -0.129 4.129 9 C -0.195 4.195 10 C 0.160 3.840 11 N -0.539 5.539 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.022 3.978 15 N -0.882 5.882 16 Si 0.934 3.066 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.271 1.271 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.131 0.869 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.408 0.592 31 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 1.965 -6.848 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 C -0.223 4.223 4 O -0.219 6.219 5 C 0.019 3.981 6 N -0.218 5.218 7 C -0.182 4.182 8 C -0.150 4.150 9 C -0.227 4.227 10 C 0.035 3.965 11 N -0.141 5.141 12 C -0.431 4.431 13 H 0.120 0.880 14 C -0.183 4.183 15 N -0.518 5.518 16 Si 0.760 3.240 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.196 1.196 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.244 0.756 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.291 2.355 -6.856 7.255 hybrid contribution 0.389 -0.618 1.306 1.496 sum 0.680 1.738 -5.550 5.855 Atomic orbital electron populations 1.21883 0.94068 1.02571 1.02135 1.22007 0.93461 0.92308 0.89105 1.22182 1.02169 0.96416 1.01490 1.86174 1.32837 1.65764 1.37131 1.18978 0.88828 0.99958 0.90313 1.66716 1.10076 1.21724 1.23323 1.21261 0.93662 1.04482 0.98766 1.21428 0.99671 1.00191 0.93748 1.20497 0.95809 1.07745 0.98654 1.17876 0.93851 0.98765 0.86004 1.40911 1.20339 1.46651 1.06176 1.19724 1.05725 1.28766 0.88917 0.87962 1.25357 0.95782 0.97791 0.99372 1.69708 1.13296 1.41002 1.27823 0.85854 0.78713 0.79651 0.79757 1.19637 1.20615 1.19638 0.91931 0.91386 0.92124 0.90027 0.92141 0.92473 0.92077 0.85169 0.87017 0.85541 0.75632 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.56 37.16 0.36 -1.78 16 2 C 0.09 1.53 3.11 -26.73 -0.08 1.44 16 3 C -0.16 -2.55 9.53 37.16 0.35 -2.20 16 4 O -0.31 -6.71 9.03 -18.83 -0.17 -6.88 16 5 C 0.21 4.78 7.48 -16.87 -0.13 4.65 16 6 N -0.50 -10.51 8.65 -13.10 -0.11 -10.62 16 7 C -0.03 -0.52 11.17 -17.50 -0.20 -0.72 16 8 C -0.13 -2.47 10.10 -39.46 -0.40 -2.87 16 9 C -0.20 -4.26 9.40 -39.07 -0.37 -4.63 16 10 C 0.16 3.83 6.66 -83.50 -0.56 3.27 16 11 N -0.54 -13.88 5.43 -9.41 -0.05 -13.93 16 12 C -0.30 -7.80 9.57 -15.13 -0.14 -7.94 16 13 H 0.10 2.50 5.75 -52.49 -0.30 2.20 16 14 C 0.02 0.55 5.50 -17.45 -0.10 0.45 16 15 N -0.88 -23.75 13.05 55.49 0.72 -23.02 16 16 Si 0.93 19.69 29.55 -169.99 -5.02 14.66 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 28 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.13 2.68 6.08 -52.49 -0.32 2.36 16 30 H 0.41 10.93 7.27 -40.82 -0.30 10.64 16 31 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 268.47 15.07 4.05 4.05 Total: -1.00 -27.66 268.47 -5.64 -33.30 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -3.80 Total: 12.76 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.26 Total: -10.31 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.56 Total: -47.58 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.17 Total: -6.88 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.66 -5.64 -33.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042392308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.482 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds