Wall clock time and date at job start Mon Mar 30 2020 02:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 O 1.42900 * 109.47108 * 119.99677 * 2 1 3 5 5 C 1.35709 * 117.00177 * 150.00045 * 4 2 1 6 6 N 1.32128 * 119.73786 * 0.02562 * 5 4 2 7 7 C 1.32022 * 121.73303 * 180.02562 * 6 5 4 8 8 C 1.38148 * 121.02373 * 359.97438 * 7 6 5 9 9 C 1.38651 * 119.37314 * 0.28073 * 8 7 6 10 10 C 1.39202 * 118.40618 * 359.50099 * 9 8 7 11 11 N 1.39400 * 120.52900 * 180.22587 * 10 9 8 12 12 C 1.36804 * 119.99863 * 0.25017 * 11 10 9 13 13 H 1.07996 * 119.99761 * 0.02562 * 12 11 10 14 14 C 1.38775 * 119.99976 * 180.02562 * 12 11 10 15 15 N 1.31607 * 119.99917 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99866 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46997 * 60.00176 * 16 14 12 18 18 H 1.48502 * 109.47024 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47098 * 300.00078 * 16 14 12 20 20 H 1.08999 * 109.47075 * 300.00111 * 1 2 3 21 21 H 1.09003 * 109.46771 * 60.00260 * 1 2 3 22 22 H 1.09000 * 109.47130 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47075 * 239.99889 * 2 1 3 24 24 H 1.08994 * 109.47131 * 299.99753 * 3 2 1 25 25 H 1.09005 * 109.47252 * 59.99572 * 3 2 1 26 26 H 1.08994 * 109.47032 * 179.97438 * 3 2 1 27 27 H 1.07999 * 119.48241 * 179.97438 * 7 6 5 28 28 H 1.08002 * 120.30889 * 179.97438 * 8 7 6 29 29 H 1.08000 * 120.79383 * 179.74766 * 9 8 7 30 30 H 0.97001 * 120.00511 * 180.25719 * 11 10 9 31 31 H 0.97000 * 120.00192 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1990 -1.3131 1.0654 6 7 3.8598 -1.2900 -0.0786 7 6 5.0225 -1.8989 -0.2212 8 6 5.5985 -2.5888 0.8280 9 6 4.9404 -2.6459 2.0471 10 6 3.7183 -1.9911 2.1712 11 7 3.0211 -2.0158 3.3781 12 6 3.5396 -2.6830 4.4540 13 1 4.4892 -3.1902 4.3684 14 6 2.8453 -2.7081 5.6553 15 7 1.6879 -2.0904 5.7594 16 14 3.5537 -3.6185 7.1246 17 1 4.8698 -3.0316 7.4831 18 1 2.6257 -3.4955 8.2775 19 1 3.7282 -5.0527 6.7811 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 0.0005 27 1 5.5312 -1.8570 -1.1730 28 1 6.5500 -3.0831 0.6984 29 1 5.3678 -3.1822 2.8815 30 1 2.1683 -1.5601 3.4551 31 1 1.2024 -2.1082 6.5990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042392308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:01 Heat of formation + Delta-G solvation = -27.048967 kcal Electronic energy + Delta-G solvation = -15000.361732 eV Core-core repulsion = 12474.128118 eV Total energy + Delta-G solvation = -2526.233613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25433 -38.88809 -37.23983 -34.17814 -33.78407 -31.88114 -29.69227 -28.11025 -26.75633 -24.40856 -23.18731 -21.84382 -19.86487 -19.04637 -18.11747 -17.06716 -16.44025 -16.16553 -15.93988 -15.36495 -14.92894 -14.70058 -14.20204 -13.89353 -13.47646 -13.27661 -13.11582 -13.09241 -12.78232 -12.71062 -12.34170 -12.27235 -12.10463 -11.73023 -11.55117 -10.79346 -10.26758 -9.87991 -8.47640 -8.40919 -5.69614 0.68461 0.75831 1.41528 1.50871 1.53105 2.26939 2.39318 2.94344 3.34407 3.39006 3.90605 4.03937 4.14369 4.27484 4.37760 4.53948 4.59351 4.72067 4.87230 4.93244 4.97628 5.02735 5.21562 5.26373 5.31805 5.36257 5.63029 5.80279 6.02169 6.70179 6.78450 7.30003 7.48531 7.60411 8.70112 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.008784 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.587851 B = 3186.779094 C = 4043.611738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 C -0.157 4.157 4 O -0.333 6.333 5 C 0.195 3.805 6 N -0.501 5.501 7 C -0.008 4.008 8 C -0.126 4.126 9 C -0.196 4.196 10 C 0.134 3.866 11 N -0.571 5.571 12 C -0.319 4.319 13 H 0.109 0.891 14 C -0.032 4.032 15 N -0.929 5.929 16 Si 1.002 2.998 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.264 1.264 20 H 0.057 0.943 21 H 0.104 0.896 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.173 0.827 28 H 0.157 0.843 29 H 0.130 0.870 30 H 0.394 0.606 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 1.738 -8.709 9.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.021 3.979 3 C -0.215 4.215 4 O -0.242 6.242 5 C 0.008 3.992 6 N -0.224 5.224 7 C -0.164 4.164 8 C -0.147 4.147 9 C -0.228 4.228 10 C 0.014 3.986 11 N -0.177 5.177 12 C -0.449 4.449 13 H 0.127 0.873 14 C -0.231 4.231 15 N -0.567 5.567 16 Si 0.825 3.175 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.189 1.189 20 H 0.076 0.924 21 H 0.122 0.878 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.190 0.810 28 H 0.174 0.826 29 H 0.147 0.853 30 H 0.228 0.772 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.883 2.133 -8.774 9.224 hybrid contribution 0.062 -0.497 1.474 1.556 sum 1.945 1.636 -7.301 7.730 Atomic orbital electron populations 1.21897 0.91872 1.02601 1.03686 1.22394 0.95227 0.92819 0.87500 1.22130 1.00847 0.95498 1.03008 1.86168 1.32547 1.66069 1.39431 1.19157 0.89470 1.00146 0.90468 1.66874 1.10845 1.22114 1.22569 1.22173 0.92444 1.01392 1.00378 1.21878 1.01013 0.99613 0.92159 1.20864 0.95125 1.06715 1.00101 1.18402 0.94724 0.99327 0.86135 1.40829 1.20662 1.49172 1.07004 1.20036 1.06134 1.29176 0.89548 0.87335 1.26266 0.96131 0.98827 1.01889 1.69835 1.14988 1.43614 1.28308 0.84829 0.77959 0.78539 0.76151 1.18877 1.20692 1.18861 0.92370 0.87754 0.92896 0.90462 0.88667 0.92873 0.93973 0.80957 0.82558 0.85272 0.77197 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.56 71.98 0.69 -3.25 16 2 C 0.08 2.60 3.11 30.60 0.10 2.70 16 3 C -0.16 -4.67 9.53 71.98 0.69 -3.98 16 4 O -0.33 -14.70 9.03 -90.29 -0.82 -15.52 16 5 C 0.20 8.93 7.48 85.01 0.64 9.56 16 6 N -0.50 -20.25 8.65 -308.28 -2.67 -22.92 16 7 C -0.01 -0.28 11.17 84.64 0.95 0.67 16 8 C -0.13 -4.34 10.10 22.35 0.23 -4.11 16 9 C -0.20 -8.30 9.40 22.60 0.21 -8.08 16 10 C 0.13 6.50 6.66 38.53 0.26 6.76 16 11 N -0.57 -30.72 5.43 -183.68 -1.00 -31.72 16 12 C -0.32 -17.09 9.57 84.05 0.80 -16.28 16 13 H 0.11 5.41 5.75 -2.91 -0.02 5.40 16 14 C -0.03 -1.70 5.50 84.86 0.47 -1.24 16 15 N -0.93 -52.40 13.05 21.64 0.28 -52.12 16 16 Si 1.00 41.24 29.55 68.60 2.03 43.27 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.08 2.65 6.99 -2.39 -0.02 2.64 16 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.17 4.57 8.06 -2.91 -0.02 4.54 16 28 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.13 5.34 6.08 -2.91 -0.02 5.32 16 30 H 0.39 22.53 7.27 -92.71 -0.67 21.85 16 31 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -61.87 268.47 3.31 -58.56 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: 0.46 Total: 37.71 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 5.02 Total: -17.26 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -3.38 Total: -106.76 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.82 Total: -15.52 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -61.87 3.31 -58.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042392308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.506 kcal (2) G-P(sol) polarization free energy of solvation -61.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds