Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46993 * 2 1 4 4 H 1.08992 * 109.47228 * 305.56757 * 3 2 1 5 5 C 1.50704 * 109.46728 * 65.57127 * 3 2 1 6 6 H 1.07997 * 120.00699 * 27.39376 * 5 3 2 7 7 C 1.37878 * 119.99728 * 207.39668 * 5 3 2 8 8 N 1.31522 * 119.99950 * 353.37863 * 7 5 3 9 9 Si 1.86800 * 120.00053 * 173.37483 * 7 5 3 10 10 H 1.48492 * 109.47323 * 90.00210 * 9 7 5 11 11 H 1.48509 * 109.46745 * 210.00055 * 9 7 5 12 12 H 1.48497 * 109.47020 * 329.99532 * 9 7 5 13 13 C 1.50699 * 109.46930 * 185.56177 * 3 2 1 14 14 O 1.21309 * 120.00779 * 270.00122 * 13 3 2 15 15 C 1.46671 * 119.99479 * 90.00443 * 13 3 2 16 16 C 1.41552 * 126.47819 * 359.69206 * 15 13 3 17 17 N 1.30371 * 107.98152 * 179.81782 * 16 15 13 18 18 N 1.39903 * 109.01110 * 0.44095 * 17 16 15 19 19 C 1.46503 * 125.70782 * 179.68179 * 18 17 16 20 20 C 1.34126 * 108.58814 * 359.71432 * 18 17 16 21 21 H 1.08998 * 109.47227 * 174.26770 * 1 2 3 22 22 H 1.09000 * 109.46956 * 294.26838 * 1 2 3 23 23 H 1.09000 * 109.47287 * 54.26712 * 1 2 3 24 24 H 1.08998 * 109.47143 * 240.00516 * 2 1 3 25 25 H 1.08995 * 109.47109 * 119.99718 * 2 1 3 26 26 H 0.96996 * 119.99805 * 354.63897 * 8 7 5 27 27 H 1.08004 * 126.00765 * 359.95232 * 16 15 13 28 28 H 1.09000 * 109.46612 * 270.03515 * 19 18 17 29 29 H 1.08994 * 109.47058 * 30.03970 * 19 18 17 30 30 H 1.08997 * 109.47275 * 150.03968 * 19 18 17 31 31 H 1.08007 * 126.31489 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 1.6534 2.1120 1.2937 6 1 1.5153 1.5213 2.1872 7 6 1.4758 3.4786 1.3365 8 7 1.7691 4.2131 0.2856 9 14 0.8186 4.2869 2.8870 10 1 1.9527 4.6564 3.7715 11 1 0.0562 5.5084 2.5233 12 1 -0.0758 3.3388 3.5985 13 6 3.5407 1.4448 -0.1377 14 8 4.2408 1.4117 0.8524 15 6 4.1547 1.4870 -1.4690 16 6 3.4735 1.5221 -2.7093 17 7 4.3667 1.5577 -3.6582 18 7 5.6424 1.5372 -3.0843 19 6 6.9105 1.5584 -3.8178 20 6 5.5104 1.4941 -1.7503 21 1 -0.3633 -1.0225 -0.1026 22 1 -0.3633 0.4224 0.9369 23 1 -0.3634 0.6002 -0.8342 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1826 3.8050 -0.4911 27 1 2.4021 1.5218 -2.8454 28 1 7.2228 0.5365 -4.0329 29 1 6.7803 2.1031 -4.7528 30 1 7.6717 2.0513 -3.2131 31 1 6.3135 1.4699 -1.0285 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368367.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = 23.650842 kcal Electronic energy + Delta-G solvation = -15079.755615 eV Core-core repulsion = 12555.720510 eV Total energy + Delta-G solvation = -2524.035105 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.88202 -37.89329 -34.39299 -33.14671 -31.79699 -29.91115 -27.74661 -26.42761 -23.89651 -22.22915 -20.84331 -20.27207 -18.75165 -16.78431 -16.49188 -15.36911 -14.68937 -14.31126 -13.91539 -13.78684 -13.54267 -13.26255 -12.75613 -12.52834 -12.32923 -11.93519 -11.75425 -11.09618 -10.89979 -10.73546 -10.47130 -10.19367 -10.04605 -9.55293 -9.27586 -8.71061 -8.51796 -8.19911 -8.06323 -6.32501 -4.02235 1.89671 2.59135 2.62952 3.49355 3.52307 3.67708 4.10746 4.55076 4.60109 5.03421 5.06127 5.16346 5.29795 5.41045 5.69839 5.85956 5.94094 6.01801 6.12719 6.26313 6.62471 6.73627 6.79571 6.93842 7.08589 7.10356 7.18396 7.35563 7.87814 8.15388 8.48878 8.87131 8.99154 9.66510 11.05942 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.008654 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.915176 B = 3234.657934 C = 3611.814004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 C -0.005 4.005 4 H 0.054 0.946 5 C -0.568 4.568 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.284 1.284 12 H -0.287 1.287 13 C 0.423 3.577 14 O -0.476 6.476 15 C -0.301 4.301 16 C 0.096 3.904 17 N -0.313 5.313 18 N -0.373 5.373 19 C 0.101 3.899 20 C 0.102 3.898 21 H 0.033 0.967 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.268 0.732 27 H 0.191 0.809 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.821 -5.848 -6.814 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 C -0.025 4.025 4 H 0.072 0.928 5 C -0.606 4.606 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.545 5.545 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.210 1.210 12 H -0.213 1.213 13 C 0.300 3.700 14 O -0.352 6.352 15 C -0.313 4.313 16 C -0.091 4.091 17 N -0.133 5.133 18 N -0.153 5.153 19 C -0.041 4.041 20 C -0.048 4.048 21 H 0.052 0.948 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.207 0.793 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.040 -4.359 -7.003 10.223 hybrid contribution 0.613 -1.362 0.074 1.495 sum 6.653 -5.721 -6.928 11.180 Atomic orbital electron populations 1.21593 0.95925 0.98856 1.02617 1.21265 0.95995 0.96698 0.99422 1.19380 0.88718 0.94199 1.00189 0.92767 1.21701 1.49893 0.94303 0.94688 0.92756 1.25842 0.95312 0.94425 1.02850 1.70777 1.39302 1.38932 1.05524 0.83547 0.76452 0.75672 0.74583 1.21583 1.21013 1.21322 1.22980 0.93705 0.69081 0.84205 1.90330 1.66046 1.38097 1.40680 1.21807 0.92156 1.19424 0.97958 1.24177 0.99646 0.95751 0.89571 1.77032 0.87423 1.26220 1.22650 1.48312 1.06316 1.56091 1.04615 1.21860 0.80992 1.03267 0.97968 1.23216 0.98833 0.97293 0.85431 0.94811 0.91730 0.93493 0.94499 0.93030 0.92110 0.79273 0.90792 0.89255 0.89507 0.80270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.64 37.16 0.36 -2.14 16 2 C -0.10 -2.00 5.37 -26.73 -0.14 -2.14 16 3 C -0.01 -0.13 1.45 -92.92 -0.13 -0.27 16 4 H 0.05 1.35 6.14 -51.93 -0.32 1.03 16 5 C -0.57 -15.85 6.86 -34.44 -0.24 -16.09 16 6 H 0.05 1.55 7.82 -52.49 -0.41 1.13 16 7 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 8 N -0.91 -27.33 13.56 55.43 0.75 -26.58 16 9 Si 1.07 25.68 29.91 -169.99 -5.08 20.59 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.42 10.30 5.90 -30.91 -0.18 10.12 16 14 O -0.48 -12.91 16.90 5.53 0.09 -12.81 16 15 C -0.30 -6.20 6.10 -105.15 -0.64 -6.84 16 16 C 0.10 1.79 11.36 -16.91 -0.19 1.59 16 17 N -0.31 -5.55 12.49 30.91 0.39 -5.16 16 18 N -0.37 -5.76 3.97 -67.52 -0.27 -6.03 16 19 C 0.10 0.96 11.44 59.85 0.68 1.64 16 20 C 0.10 1.76 11.30 -16.47 -0.19 1.58 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 1.31 7.59 -51.93 -0.39 0.91 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.27 7.97 6.70 -40.82 -0.27 7.70 16 27 H 0.19 3.18 7.56 -52.48 -0.40 2.79 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.18 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 273.85 15.07 4.13 4.13 Total: -1.00 -34.12 273.85 -4.74 -38.86 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.97 Total: -0.92 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.77 Total: -12.07 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.87 Total: -37.77 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.12 -4.74 -38.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368367.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.508 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds