Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46993 * 2 1 4 4 H 1.08992 * 109.47228 * 305.56757 * 3 2 1 5 5 C 1.50704 * 109.46728 * 65.57127 * 3 2 1 6 6 H 1.07997 * 120.00699 * 27.39376 * 5 3 2 7 7 C 1.37878 * 119.99728 * 207.39668 * 5 3 2 8 8 N 1.31522 * 119.99950 * 353.37863 * 7 5 3 9 9 Si 1.86800 * 120.00053 * 173.37483 * 7 5 3 10 10 H 1.48492 * 109.47323 * 90.00210 * 9 7 5 11 11 H 1.48509 * 109.46745 * 210.00055 * 9 7 5 12 12 H 1.48497 * 109.47020 * 329.99532 * 9 7 5 13 13 C 1.50699 * 109.46930 * 185.56177 * 3 2 1 14 14 O 1.21309 * 120.00779 * 270.00122 * 13 3 2 15 15 C 1.46671 * 119.99479 * 90.00443 * 13 3 2 16 16 C 1.41552 * 126.47819 * 359.69206 * 15 13 3 17 17 N 1.30371 * 107.98152 * 179.81782 * 16 15 13 18 18 N 1.39903 * 109.01110 * 0.44095 * 17 16 15 19 19 C 1.46503 * 125.70782 * 179.68179 * 18 17 16 20 20 C 1.34126 * 108.58814 * 359.71432 * 18 17 16 21 21 H 1.08998 * 109.47227 * 174.26770 * 1 2 3 22 22 H 1.09000 * 109.46956 * 294.26838 * 1 2 3 23 23 H 1.09000 * 109.47287 * 54.26712 * 1 2 3 24 24 H 1.08998 * 109.47143 * 240.00516 * 2 1 3 25 25 H 1.08995 * 109.47109 * 119.99718 * 2 1 3 26 26 H 0.96996 * 119.99805 * 354.63897 * 8 7 5 27 27 H 1.08004 * 126.00765 * 359.95232 * 16 15 13 28 28 H 1.09000 * 109.46612 * 270.03515 * 19 18 17 29 29 H 1.08994 * 109.47058 * 30.03970 * 19 18 17 30 30 H 1.08997 * 109.47275 * 150.03968 * 19 18 17 31 31 H 1.08007 * 126.31489 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 1.6534 2.1120 1.2937 6 1 1.5153 1.5213 2.1872 7 6 1.4758 3.4786 1.3365 8 7 1.7691 4.2131 0.2856 9 14 0.8186 4.2869 2.8870 10 1 1.9527 4.6564 3.7715 11 1 0.0562 5.5084 2.5233 12 1 -0.0758 3.3388 3.5985 13 6 3.5407 1.4448 -0.1377 14 8 4.2408 1.4117 0.8524 15 6 4.1547 1.4870 -1.4690 16 6 3.4735 1.5221 -2.7093 17 7 4.3667 1.5577 -3.6582 18 7 5.6424 1.5372 -3.0843 19 6 6.9105 1.5584 -3.8178 20 6 5.5104 1.4941 -1.7503 21 1 -0.3633 -1.0225 -0.1026 22 1 -0.3633 0.4224 0.9369 23 1 -0.3634 0.6002 -0.8342 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1826 3.8050 -0.4911 27 1 2.4021 1.5218 -2.8454 28 1 7.2228 0.5365 -4.0329 29 1 6.7803 2.1031 -4.7528 30 1 7.6717 2.0513 -3.2131 31 1 6.3135 1.4699 -1.0285 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368367.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = 1.299135 kcal Electronic energy + Delta-G solvation = -15080.724858 eV Core-core repulsion = 12555.720510 eV Total energy + Delta-G solvation = -2525.004347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.27389 -39.75695 -36.31089 -34.36856 -33.76349 -31.37722 -29.29413 -27.84811 -25.85351 -23.80794 -22.36552 -21.77122 -20.43477 -18.65739 -18.13977 -16.56660 -16.29100 -15.92527 -15.70980 -15.52580 -15.19578 -14.95434 -14.02885 -13.83689 -13.67655 -13.46513 -13.39706 -12.82026 -12.65576 -12.61842 -11.94963 -11.91995 -11.84759 -11.42055 -10.73434 -10.60387 -10.56558 -10.02322 -9.65675 -8.57072 -6.25651 0.43282 1.06225 1.48852 1.54063 1.62093 1.79941 2.38077 2.60310 3.13817 3.44550 3.80262 3.98778 4.18419 4.33563 4.39308 4.43800 4.53298 4.58421 4.64653 4.67135 4.93226 5.05607 5.23255 5.32215 5.42284 5.47086 5.62281 5.88228 6.07480 6.25222 6.49016 6.67159 7.12389 7.48779 8.82566 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.008654 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.915176 B = 3234.657934 C = 3611.814004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.013 4.013 4 H 0.046 0.954 5 C -0.575 4.575 6 H 0.040 0.960 7 C -0.030 4.030 8 N -0.935 5.935 9 Si 1.108 2.892 10 H -0.286 1.286 11 H -0.279 1.279 12 H -0.267 1.267 13 C 0.423 3.577 14 O -0.520 6.520 15 C -0.345 4.345 16 C 0.093 3.907 17 N -0.321 5.321 18 N -0.359 5.359 19 C 0.086 3.914 20 C 0.119 3.881 21 H 0.068 0.932 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.258 0.742 27 H 0.198 0.802 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -6.460 -7.765 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.130 4.130 3 C -0.032 4.032 4 H 0.064 0.936 5 C -0.613 4.613 6 H 0.058 0.942 7 C -0.228 4.228 8 N -0.573 5.573 9 Si 0.931 3.069 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.192 1.192 13 C 0.304 3.696 14 O -0.399 6.399 15 C -0.358 4.358 16 C -0.094 4.094 17 N -0.142 5.142 18 N -0.138 5.138 19 C -0.053 4.053 20 C -0.033 4.033 21 H 0.087 0.913 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.214 0.786 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.869 -4.994 -8.009 11.673 hybrid contribution 0.482 -1.237 0.256 1.352 sum 7.351 -6.231 -7.754 12.369 Atomic orbital electron populations 1.21541 0.94324 1.00980 1.01599 1.21235 0.97397 0.94380 0.99958 1.19424 0.89552 0.96005 0.98232 0.93584 1.21973 1.49229 0.94477 0.95584 0.94167 1.27095 0.95423 0.95507 1.04749 1.70885 1.41208 1.39120 1.06061 0.83047 0.76458 0.75525 0.71853 1.21272 1.20435 1.19218 1.22947 0.93457 0.67739 0.85450 1.90295 1.66556 1.40834 1.42245 1.21499 0.94067 1.23604 0.96596 1.24276 1.00373 0.95707 0.88999 1.76995 0.88329 1.26285 1.22583 1.48783 1.07281 1.53371 1.04323 1.22425 0.78849 1.05543 0.98475 1.23497 0.98191 0.94980 0.86665 0.91309 0.93763 0.93248 0.92094 0.94219 0.93160 0.78570 0.88310 0.88113 0.86613 0.77883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.64 71.98 0.69 -3.97 16 2 C -0.09 -3.80 5.37 30.60 0.16 -3.64 16 3 C -0.01 -0.63 1.45 -12.28 -0.02 -0.65 16 4 H 0.05 2.36 6.14 -2.39 -0.01 2.34 16 5 C -0.57 -32.77 6.86 25.60 0.18 -32.60 16 6 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 7 C -0.03 -1.71 5.45 84.65 0.46 -1.25 16 8 N -0.94 -57.26 13.56 21.45 0.29 -56.97 16 9 Si 1.11 52.05 29.91 68.60 2.05 54.11 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 C 0.42 20.96 5.90 27.89 0.16 21.13 16 14 O -0.52 -28.87 16.90 -3.12 -0.05 -28.92 16 15 C -0.34 -14.10 6.10 -20.21 -0.12 -14.23 16 16 C 0.09 3.42 11.36 85.73 0.97 4.39 16 17 N -0.32 -10.81 12.49 -56.13 -0.70 -11.51 16 18 N -0.36 -10.09 3.97 -367.52 -1.46 -11.55 16 19 C 0.09 1.29 11.44 127.77 1.46 2.75 16 20 C 0.12 3.91 11.30 84.39 0.95 4.86 16 21 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.04 1.78 7.59 -2.39 -0.02 1.76 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.26 15.81 6.70 -92.71 -0.62 15.19 16 27 H 0.20 6.61 7.56 -2.91 -0.02 6.59 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.20 5.56 8.06 -2.91 -0.02 5.53 16 Total: -1.00 -74.90 273.85 6.30 -68.60 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.26 Total: 9.47 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.91 Total: -23.21 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.87 Total: -80.04 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.05 Total: -28.92 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.11 kcal Total: -74.90 6.30 -68.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368367.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.898 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds