Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47071 * 2 1 4 4 C 1.47202 * 109.46710 * 240.00565 * 2 1 3 5 5 N 2.60804 * 109.46686 * 240.00619 * 2 1 3 6 6 C 1.50700 * 109.47115 * 120.00811 * 2 1 3 7 7 O 1.21279 * 120.00181 * 83.96116 * 6 2 1 8 8 N 1.34782 * 119.99628 * 263.95849 * 6 2 1 9 9 C 1.46498 * 120.00059 * 5.17037 * 8 6 2 10 10 C 1.50703 * 109.46894 * 84.47946 * 9 8 6 11 11 H 1.07999 * 120.00549 * 359.72660 * 10 9 8 12 12 C 1.37878 * 119.99711 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00053 * 359.73434 * 12 10 9 14 14 Si 1.86801 * 120.00148 * 179.72566 * 12 10 9 15 15 H 1.48498 * 109.46987 * 60.00350 * 14 12 10 16 16 H 1.48494 * 109.47585 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47020 * 300.00515 * 14 12 10 18 18 C 1.46491 * 119.99604 * 185.16608 * 8 6 2 19 19 C 1.53006 * 117.50302 * 16.51716 * 18 8 6 20 20 C 1.53001 * 117.50386 * 307.85299 * 18 8 6 21 21 H 1.08999 * 109.46879 * 299.92373 * 1 2 3 22 22 H 1.08999 * 109.47538 * 59.91729 * 1 2 3 23 23 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47155 * 324.48667 * 9 8 6 25 25 H 1.08999 * 109.47030 * 204.47974 * 9 8 6 26 26 H 0.97001 * 120.00203 * 180.02562 * 13 12 10 27 27 H 1.09003 * 115.54703 * 162.17997 * 18 8 6 28 28 H 1.08997 * 117.49282 * 359.97438 * 19 18 8 29 29 H 1.08993 * 117.49844 * 145.01534 * 19 18 8 30 30 H 1.08996 * 117.49575 * 214.97896 * 20 18 8 31 31 H 1.09001 * 117.49660 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2020 5 7 2.3992 -1.2292 -2.1296 6 6 2.0323 -0.7106 1.2304 7 8 2.1303 -1.9194 1.2350 8 7 2.3728 -0.0026 2.3256 9 6 2.1485 1.4447 2.3612 10 6 0.7296 1.7228 2.7859 11 1 0.0603 0.9034 3.0029 12 6 0.2843 3.0233 2.8925 13 7 1.0993 4.0211 2.6286 14 14 -1.4768 3.3680 3.4115 15 1 -1.7164 2.7951 4.7604 16 1 -1.7038 4.8350 3.4489 17 1 -2.4103 2.7478 2.4373 18 6 2.9670 -0.6805 3.4803 19 6 3.5307 -2.0860 3.2616 20 6 2.2282 -1.8964 4.0431 21 1 -0.3633 0.5126 0.8907 22 1 -0.3634 0.5151 -0.8892 23 1 -0.3634 -1.0276 -0.0005 24 1 2.3196 1.8634 1.3695 25 1 2.8368 1.9016 3.0722 26 1 0.7861 4.9361 2.7040 27 1 3.4860 -0.0347 4.1887 28 1 3.4590 -2.5064 2.2585 29 1 4.4203 -2.3649 3.8262 30 1 2.2615 -2.0507 5.1216 31 1 1.2997 -2.1917 3.5544 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044826622.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = 25.232364 kcal Electronic energy + Delta-G solvation = -15306.037442 eV Core-core repulsion = 12782.070917 eV Total energy + Delta-G solvation = -2523.966525 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98806 -36.74108 -35.58850 -34.54155 -32.58281 -31.84135 -27.23802 -24.92366 -23.19722 -22.37559 -21.87921 -19.18550 -17.09547 -16.68965 -16.39478 -15.42532 -14.67748 -14.52731 -14.37605 -13.53113 -13.22771 -12.76495 -12.48544 -12.40637 -12.24838 -11.84617 -11.76590 -11.30652 -11.24391 -11.05079 -10.89085 -10.67909 -10.60440 -10.30293 -9.78060 -9.68155 -8.90028 -8.63054 -7.68221 -6.28788 -4.36732 2.84790 2.99824 3.13622 3.18542 3.24943 3.27739 3.71212 4.23503 4.32458 4.51250 4.97180 5.05046 5.40057 5.43016 5.48208 5.55403 5.60603 6.06629 6.11641 6.16966 6.19090 6.46382 6.62414 6.67802 6.82010 7.02264 7.44757 7.65740 7.82130 7.91162 8.10071 8.63753 8.78274 9.31058 10.77598 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.010919 C = 0.008522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.829622 B = 2563.805705 C = 3284.880753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.014 4.014 3 H 0.142 0.858 4 C 0.234 3.766 5 N -0.441 5.441 6 C 0.529 3.471 7 O -0.555 6.555 8 N -0.561 5.561 9 C 0.234 3.766 10 C -0.540 4.540 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.888 5.888 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.087 3.913 19 C -0.204 4.204 20 C -0.186 4.186 21 H 0.105 0.895 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.267 0.733 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -3.564 0.821 3.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 H 0.160 0.840 4 C -0.085 4.085 5 N -0.117 5.117 6 C 0.316 3.684 7 O -0.436 6.436 8 N -0.288 5.288 9 C 0.115 3.885 10 C -0.578 4.578 11 H 0.083 0.917 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.018 4.018 19 C -0.241 4.241 20 C -0.225 4.225 21 H 0.124 0.876 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.044 -4.726 -0.574 4.874 hybrid contribution -1.129 0.729 0.844 1.587 sum -0.085 -3.997 0.271 4.007 Atomic orbital electron populations 1.21783 0.89300 1.03122 1.05498 1.18966 0.99517 1.00348 0.84964 0.84041 1.28616 0.92919 0.92920 0.93999 1.81095 1.09148 1.09183 1.12319 1.19818 0.77623 0.86857 0.84143 1.90506 1.55024 1.14101 1.83964 1.47628 1.57758 1.10912 1.12512 1.19608 0.97628 0.72542 0.98733 1.21405 0.96415 0.92352 1.47650 0.91661 1.24920 0.97912 0.95933 0.94781 1.69896 1.35578 0.99401 1.47735 0.86595 0.84393 0.77281 0.79505 1.20103 1.21177 1.19839 1.21562 1.00791 0.88325 0.91090 1.23829 0.96288 0.99455 1.04566 1.23136 0.97077 1.03478 0.98788 0.87615 0.91319 0.92178 0.94069 0.93914 0.92283 0.85625 0.84902 0.90021 0.89340 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.13 37.16 0.34 -1.81 16 2 C -0.01 -0.23 2.60 -94.56 -0.25 -0.48 16 3 H 0.14 2.28 5.77 -51.93 -0.30 1.98 16 4 C 0.23 4.16 14.16 -20.76 -0.29 3.87 16 5 N -0.44 -8.49 18.54 42.15 0.78 -7.71 16 6 C 0.53 10.08 6.39 -10.98 -0.07 10.01 16 7 O -0.56 -11.50 12.21 5.56 0.07 -11.43 16 8 N -0.56 -10.73 2.84 -167.47 -0.48 -11.21 16 9 C 0.23 4.91 5.01 -5.19 -0.03 4.88 16 10 C -0.54 -12.38 7.80 -34.44 -0.27 -12.65 16 11 H 0.07 1.52 7.48 -52.49 -0.39 1.13 16 12 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -22.42 13.29 55.43 0.74 -21.69 16 14 Si 0.90 18.92 29.54 -169.99 -5.02 13.90 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 C 0.09 1.53 6.61 -67.93 -0.45 1.08 16 19 C -0.20 -3.35 9.63 -26.69 -0.26 -3.61 16 20 C -0.19 -3.09 9.88 -26.69 -0.26 -3.35 16 21 H 0.11 1.81 6.12 -51.93 -0.32 1.49 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.86 5.87 -51.93 -0.30 0.56 16 25 H 0.04 0.95 7.96 -51.93 -0.41 0.54 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.13 2.01 8.04 -51.93 -0.42 1.59 16 28 H 0.13 2.51 5.20 -52.18 -0.27 2.24 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.74 7.61 -51.93 -0.40 1.35 16 LS Contribution 269.33 15.07 4.06 4.06 Total: -1.00 -26.35 269.33 -5.12 -31.47 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.64 Total: 3.14 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.63 Total: -0.53 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.04 Total: -40.61 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.07 Total: -11.43 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.35 -5.12 -31.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044826622.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.703 kcal (2) G-P(sol) polarization free energy of solvation -26.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds