Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99977 * 2 1 4 4 C 1.50698 * 109.47264 * 293.94875 * 3 2 1 5 5 H 1.08000 * 119.99816 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99940 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00206 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99607 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46761 * 90.00238 * 8 6 4 10 10 H 1.48500 * 109.46714 * 210.00198 * 8 6 4 11 11 H 1.48500 * 109.47138 * 329.99814 * 8 6 4 12 12 C 1.46902 * 110.99329 * 123.94912 * 2 1 3 13 13 C 1.50707 * 109.47101 * 66.05064 * 12 2 1 14 14 O 1.21445 * 119.99644 * 359.97438 * 13 12 2 15 15 C 1.41349 * 120.00008 * 179.97438 * 13 12 2 16 16 C 1.38427 * 126.30654 * 0.03855 * 15 13 12 17 17 C 1.39593 * 106.93755 * 179.72917 * 16 15 13 18 18 C 1.35637 * 107.90578 * 0.38649 * 17 16 15 19 19 N 1.34875 * 109.05933 * 359.60772 * 18 17 16 20 20 H 0.97006 * 125.64943 * 180.21543 * 19 18 17 21 21 H 1.08997 * 109.47688 * 296.05221 * 1 2 3 22 22 H 1.09000 * 109.46584 * 56.04812 * 1 2 3 23 23 H 1.09000 * 109.47483 * 176.04516 * 1 2 3 24 24 H 1.08995 * 109.47280 * 53.95176 * 3 2 1 25 25 H 1.09005 * 109.46550 * 173.94894 * 3 2 1 26 26 H 0.96999 * 119.99961 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47351 * 306.04846 * 12 2 1 28 28 H 1.09004 * 109.46936 * 186.04375 * 12 2 1 29 29 H 1.07999 * 126.52930 * 359.97438 * 16 15 13 30 30 H 1.07997 * 126.05066 * 180.23329 * 17 16 15 31 31 H 1.08002 * 125.47395 * 179.87942 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0279 3.3491 -1.5289 7 7 2.7138 4.0012 -0.6158 8 14 1.5842 4.1863 -3.1388 9 1 0.2721 4.8672 -2.9973 10 1 2.6270 5.1870 -3.4801 11 1 1.5009 3.1703 -4.2186 12 6 1.9953 -0.7659 1.1377 13 6 1.6368 -2.2204 0.9730 14 8 1.0038 -2.5836 0.0022 15 6 2.0373 -3.1619 1.9483 16 6 2.7577 -2.8935 3.0995 17 6 2.9228 -4.1076 3.7683 18 6 2.3238 -5.0751 3.0301 19 7 1.7815 -4.5166 1.9287 20 1 1.2929 -4.9897 1.2371 21 1 -0.3634 0.4513 0.9232 22 1 -0.3632 0.5740 -0.8525 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5611 1.9273 0.8308 25 1 3.0798 1.3443 0.1083 26 1 2.9890 4.9170 -0.7781 27 1 1.5609 -0.3872 2.0628 28 1 3.0796 -0.6611 1.1758 29 1 3.1194 -1.9280 3.4210 30 1 3.4385 -4.2515 4.7062 31 1 2.2834 -6.1237 3.2857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048013452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = -4.834444 kcal Electronic energy + Delta-G solvation = -14599.658172 eV Core-core repulsion = 12074.387853 eV Total energy + Delta-G solvation = -2525.270319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.30504 -40.05447 -37.58398 -34.64328 -32.33948 -31.41387 -29.53150 -28.42727 -26.12852 -23.83584 -22.27853 -21.44312 -20.55823 -18.89508 -18.38249 -16.87757 -16.58526 -16.19194 -16.10508 -15.52656 -15.17878 -14.70756 -14.48850 -14.34860 -13.79289 -13.33475 -13.26400 -13.18847 -12.78495 -12.63567 -12.60570 -12.37148 -11.98277 -11.44747 -10.65324 -10.60329 -9.96761 -9.22703 -9.02280 -8.20920 -6.30370 0.12264 1.41023 1.42458 1.54500 1.78457 2.17656 2.23964 2.41368 3.11290 3.18922 3.56762 4.24638 4.33639 4.37268 4.41770 4.49522 4.50707 4.58895 4.66834 5.07376 5.14937 5.16420 5.26156 5.28272 5.63722 5.76596 5.97284 6.02428 6.26580 6.50034 6.54778 6.74153 6.84643 7.38835 8.90165 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.064524 B = 0.005419 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.844943 B = 5165.610312 C = 5444.472475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.545 5.545 3 C 0.207 3.793 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.269 1.269 12 C 0.018 3.982 13 C 0.423 3.577 14 O -0.498 6.498 15 C -0.126 4.126 16 C -0.110 4.110 17 C -0.231 4.231 18 C 0.051 3.949 19 N -0.522 5.522 20 H 0.427 0.573 21 H 0.014 0.986 22 H 0.056 0.944 23 H 0.071 0.929 24 H -0.028 1.028 25 H 0.013 0.987 26 H 0.266 0.734 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.157 0.843 30 H 0.168 0.832 31 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -16.824 9.656 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.270 5.270 3 C 0.081 3.919 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.571 5.571 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.194 1.194 12 C -0.112 4.112 13 C 0.306 3.694 14 O -0.378 6.378 15 C -0.237 4.237 16 C -0.136 4.136 17 C -0.254 4.254 18 C -0.088 4.088 19 N -0.115 5.115 20 H 0.266 0.734 21 H 0.032 0.968 22 H 0.075 0.925 23 H 0.089 0.911 24 H -0.011 1.011 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.174 0.826 30 H 0.186 0.814 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.601 -17.111 8.604 19.162 hybrid contribution -0.505 1.036 -0.256 1.181 sum -1.106 -16.075 8.348 18.147 Atomic orbital electron populations 1.22253 0.87642 1.01159 0.99677 1.61813 1.08415 1.15691 1.41061 1.19458 0.94123 0.82992 0.95342 1.21443 1.35110 0.97655 1.02452 0.92511 1.25854 0.94902 0.97834 1.00692 1.70060 1.39065 1.11938 1.36074 0.85396 0.78110 0.78043 0.79149 1.19694 1.20330 1.19399 1.22342 1.02665 0.92082 0.94073 1.20413 0.75828 0.90220 0.82942 1.90506 1.33887 1.82326 1.31059 1.19679 1.15366 0.85647 1.02972 1.21999 0.98065 1.00636 0.92948 1.21329 1.08733 0.91764 1.03613 1.22833 0.97893 1.01160 0.86904 1.42020 1.42249 1.06488 1.20714 0.73412 0.96751 0.92511 0.91088 1.01080 0.96903 0.92533 0.90876 0.87235 0.82581 0.81427 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.80 9.03 127.69 1.15 2.96 16 2 N -0.55 -25.78 4.49 -931.64 -4.18 -29.96 16 3 C 0.21 11.36 4.72 85.56 0.40 11.76 16 4 C -0.53 -31.20 8.46 25.60 0.22 -30.99 16 5 H 0.06 3.37 7.12 -2.91 -0.02 3.35 16 6 C 0.01 0.32 5.46 84.66 0.46 0.78 16 7 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 8 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.02 0.65 4.70 85.56 0.40 1.06 16 13 C 0.42 14.61 6.66 26.45 0.18 14.79 16 14 O -0.50 -20.08 15.01 -3.54 -0.05 -20.14 16 15 C -0.13 -3.41 6.85 39.00 0.27 -3.14 16 16 C -0.11 -2.46 10.31 22.64 0.23 -2.23 16 17 C -0.23 -3.86 10.81 21.99 0.24 -3.62 16 18 C 0.05 0.73 11.87 83.62 0.99 1.72 16 19 N -0.52 -10.62 6.02 -187.89 -1.13 -11.75 16 20 H 0.43 7.54 8.96 -92.70 -0.83 6.71 16 21 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.06 2.66 6.76 -2.39 -0.02 2.64 16 23 H 0.07 2.96 5.88 -2.39 -0.01 2.94 16 24 H -0.03 -1.65 8.12 -2.39 -0.02 -1.67 16 25 H 0.01 0.74 7.93 -2.38 -0.02 0.72 16 26 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.07 2.48 8.12 -2.39 -0.02 2.47 16 28 H 0.11 3.86 7.93 -2.39 -0.02 3.84 16 29 H 0.16 3.13 7.93 -2.91 -0.02 3.11 16 30 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -72.45 269.86 1.79 -70.66 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.30 Total: 6.75 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.54 Total: -6.91 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -5.03 Total: -97.78 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.45 1.79 -70.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048013452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.827 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds