Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47383 * 2 1 4 4 N 1.46503 * 109.47092 * 179.97438 * 3 2 1 5 5 N 1.28128 * 119.06273 * 269.99491 * 4 3 2 6 6 C 1.30706 * 123.99276 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.32879 * 180.02562 * 6 5 4 8 8 C 1.39245 * 121.33928 * 359.97438 * 6 5 4 9 9 C 1.40959 * 117.81750 * 0.02562 * 8 6 5 10 10 C 1.40388 * 121.64253 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99586 * 154.83606 * 10 9 8 12 12 C 1.40264 * 120.00481 * 334.83613 * 10 9 8 13 13 N 1.30677 * 120.00165 * 160.00877 * 12 10 9 14 14 Si 1.86802 * 119.99845 * 340.01343 * 12 10 9 15 15 H 1.48492 * 109.47158 * 94.60604 * 14 12 10 16 16 H 1.48500 * 109.46774 * 214.60914 * 14 12 10 17 17 H 1.48501 * 109.46910 * 334.60560 * 14 12 10 18 18 C 1.34850 * 119.06201 * 89.73121 * 4 3 2 19 19 O 1.21793 * 120.86968 * 0.02562 * 18 4 3 20 20 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46954 * 300.00597 * 1 2 3 22 22 H 1.09004 * 109.46624 * 59.99911 * 1 2 3 23 23 H 1.09004 * 109.46624 * 120.00089 * 2 1 3 24 24 H 1.09002 * 109.46954 * 239.99403 * 2 1 3 25 25 H 1.09004 * 109.47313 * 299.99667 * 3 2 1 26 26 H 1.09002 * 109.47563 * 59.99776 * 3 2 1 27 27 H 1.08992 * 109.47101 * 0.02562 * 7 6 5 28 28 H 1.08997 * 109.47051 * 120.00710 * 7 6 5 29 29 H 1.08998 * 109.46672 * 240.00176 * 7 6 5 30 30 H 1.07995 * 121.09128 * 180.02562 * 8 6 5 31 31 H 0.97000 * 120.00253 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.1270 1.4426 1.1208 6 6 5.4292 1.4421 1.2337 7 6 6.0512 1.4418 2.6064 8 6 6.2534 1.4407 0.1114 9 6 5.6380 1.4404 -1.1567 10 6 6.3916 1.4384 -2.3412 11 1 5.9667 1.0405 -3.2509 12 6 7.6963 1.9533 -2.3432 13 7 8.5305 1.6158 -3.2907 14 14 8.2415 3.1214 -0.9912 15 1 8.9173 2.3526 0.0845 16 1 9.1848 4.1219 -1.5522 17 1 7.0558 3.8185 -0.4314 18 6 4.1606 1.4366 -1.1778 19 8 3.5509 1.4320 -2.2321 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9564 0.8900 27 1 5.2651 1.4417 3.3614 28 1 6.6689 0.5517 2.7252 29 1 6.6694 2.3316 2.7252 30 1 7.3289 1.4398 0.2093 31 1 9.4327 1.9721 -3.2924 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082449648.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -3.931255 kcal Electronic energy + Delta-G solvation = -15214.999823 eV Core-core repulsion = 12689.768669 eV Total energy + Delta-G solvation = -2525.231154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19565 -36.41592 -35.42334 -34.05822 -32.43931 -30.95567 -27.98607 -26.13334 -25.32670 -22.70753 -21.30628 -21.02211 -17.80458 -16.81693 -16.02416 -15.36906 -14.99694 -14.76815 -14.52677 -13.38947 -13.11934 -12.94805 -12.69790 -12.25629 -12.08291 -11.77193 -11.70267 -11.56880 -11.35592 -11.17778 -10.91529 -10.66833 -10.39628 -10.06033 -9.73549 -9.58216 -8.59790 -8.13830 -7.36619 -7.25854 -4.72130 2.09266 2.93719 2.99065 3.18774 3.19137 3.57556 3.80698 4.17088 5.00399 5.15342 5.31910 5.41001 5.50261 5.82019 5.91335 5.94586 6.00193 6.11355 6.16067 6.22614 6.33519 6.43392 6.52056 6.59295 6.69911 7.01188 7.27238 7.38177 7.73348 7.91175 8.11696 8.37233 9.05741 9.59634 9.89467 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033600 B = 0.009981 C = 0.008140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.140638 B = 2804.538013 C = 3438.882676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.130 3.870 4 N -0.361 5.361 5 N -0.383 5.383 6 C 0.145 3.855 7 C -0.080 4.080 8 C -0.377 4.377 9 C 0.024 3.976 10 C -0.350 4.350 11 H 0.105 0.895 12 C 0.078 3.922 13 N -0.763 5.763 14 Si 0.935 3.065 15 H -0.262 1.262 16 H -0.291 1.291 17 H -0.242 1.242 18 C 0.476 3.524 19 O -0.561 6.561 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 0.429 7.682 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.008 3.992 4 N -0.177 5.177 5 N -0.208 5.208 6 C -0.020 4.020 7 C -0.139 4.139 8 C -0.404 4.404 9 C 0.012 3.988 10 C -0.379 4.379 11 H 0.123 0.877 12 C -0.148 4.148 13 N -0.384 5.384 14 Si 0.760 3.240 15 H -0.188 1.188 16 H -0.219 1.219 17 H -0.165 1.165 18 C 0.271 3.729 19 O -0.442 6.442 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.311 0.412 7.411 9.126 hybrid contribution 1.129 0.381 -0.255 1.218 sum -4.182 0.793 7.156 8.326 Atomic orbital electron populations 1.21667 0.95252 1.01599 1.01730 1.21833 0.95759 0.97173 1.02762 1.21499 0.77220 0.97468 1.03014 1.45629 1.06742 1.62838 1.02526 1.70188 1.11564 1.28453 1.10594 1.20672 0.88344 0.97333 0.95611 1.20379 0.99627 1.01640 0.92296 1.20999 0.98540 1.29867 0.91033 1.19899 0.89477 0.94904 0.94482 1.19492 0.95098 1.26510 0.96821 0.87739 1.26518 0.95127 0.96174 0.96942 1.69596 1.06177 1.32605 1.30070 0.85862 0.79525 0.79332 0.79259 1.18792 1.21858 1.16517 1.20073 0.89931 0.79260 0.83666 1.90694 1.69910 1.53272 1.30290 0.92675 0.92699 0.92580 0.91537 0.91653 0.89652 0.90044 0.91811 0.91481 0.91745 0.87200 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.14 -2.24 6.25 -26.73 -0.17 -2.41 16 3 C 0.13 2.41 5.56 -4.04 -0.02 2.38 16 4 N -0.36 -8.35 3.22 -61.22 -0.20 -8.55 16 5 N -0.38 -8.63 10.68 33.53 0.36 -8.27 16 6 C 0.14 3.20 6.84 -82.70 -0.57 2.64 16 7 C -0.08 -1.35 10.14 36.01 0.36 -0.99 16 8 C -0.38 -9.16 7.14 -38.18 -0.27 -9.43 16 9 C 0.02 0.63 5.39 -104.17 -0.56 0.07 16 10 C -0.35 -9.56 9.39 -38.01 -0.36 -9.92 16 11 H 0.10 3.06 8.00 -52.48 -0.42 2.64 16 12 C 0.08 1.96 5.43 -17.28 -0.09 1.87 16 13 N -0.76 -19.02 13.92 55.56 0.77 -18.25 16 14 Si 0.93 20.19 24.51 -169.99 -4.17 16.03 16 15 H -0.26 -5.38 6.62 56.52 0.37 -5.00 16 16 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.24 -5.51 6.86 56.52 0.39 -5.12 16 18 C 0.48 12.55 7.70 -12.34 -0.10 12.45 16 19 O -0.56 -15.67 16.30 5.11 0.08 -15.58 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.09 1.60 7.40 -51.93 -0.38 1.22 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 2.58 4.41 -52.49 -0.23 2.34 16 31 H 0.30 6.52 8.29 -40.82 -0.34 6.18 16 LS Contribution 264.31 15.07 3.98 3.98 Total: -1.00 -29.39 264.31 -4.58 -33.98 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.01 Total: 1.42 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.40 Total: -4.75 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.93 Total: -35.07 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.08 Total: -15.58 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.17 Total: 16.03 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.39 -4.58 -33.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082449648.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.045 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds