Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47383 * 2 1 4 4 N 1.46503 * 109.47092 * 179.97438 * 3 2 1 5 5 N 1.28128 * 119.06273 * 269.99491 * 4 3 2 6 6 C 1.30706 * 123.99276 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.32879 * 180.02562 * 6 5 4 8 8 C 1.39245 * 121.33928 * 359.97438 * 6 5 4 9 9 C 1.40959 * 117.81750 * 0.02562 * 8 6 5 10 10 C 1.40388 * 121.64253 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99586 * 154.83606 * 10 9 8 12 12 C 1.40264 * 120.00481 * 334.83613 * 10 9 8 13 13 N 1.30677 * 120.00165 * 160.00877 * 12 10 9 14 14 Si 1.86802 * 119.99845 * 340.01343 * 12 10 9 15 15 H 1.48492 * 109.47158 * 94.60604 * 14 12 10 16 16 H 1.48500 * 109.46774 * 214.60914 * 14 12 10 17 17 H 1.48501 * 109.46910 * 334.60560 * 14 12 10 18 18 C 1.34850 * 119.06201 * 89.73121 * 4 3 2 19 19 O 1.21793 * 120.86968 * 0.02562 * 18 4 3 20 20 H 1.08994 * 109.47210 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46954 * 300.00597 * 1 2 3 22 22 H 1.09004 * 109.46624 * 59.99911 * 1 2 3 23 23 H 1.09004 * 109.46624 * 120.00089 * 2 1 3 24 24 H 1.09002 * 109.46954 * 239.99403 * 2 1 3 25 25 H 1.09004 * 109.47313 * 299.99667 * 3 2 1 26 26 H 1.09002 * 109.47563 * 59.99776 * 3 2 1 27 27 H 1.08992 * 109.47101 * 0.02562 * 7 6 5 28 28 H 1.08997 * 109.47051 * 120.00710 * 7 6 5 29 29 H 1.08998 * 109.46672 * 240.00176 * 7 6 5 30 30 H 1.07995 * 121.09128 * 180.02562 * 8 6 5 31 31 H 0.97000 * 120.00253 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.1270 1.4426 1.1208 6 6 5.4292 1.4421 1.2337 7 6 6.0512 1.4418 2.6064 8 6 6.2534 1.4407 0.1114 9 6 5.6380 1.4404 -1.1567 10 6 6.3916 1.4384 -2.3412 11 1 5.9667 1.0405 -3.2509 12 6 7.6963 1.9533 -2.3432 13 7 8.5305 1.6158 -3.2907 14 14 8.2415 3.1214 -0.9912 15 1 8.9173 2.3526 0.0845 16 1 9.1848 4.1219 -1.5522 17 1 7.0558 3.8185 -0.4314 18 6 4.1606 1.4366 -1.1778 19 8 3.5509 1.4320 -2.2321 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9564 0.8900 27 1 5.2651 1.4417 3.3614 28 1 6.6689 0.5517 2.7252 29 1 6.6694 2.3316 2.7252 30 1 7.3289 1.4398 0.2093 31 1 9.4327 1.9721 -3.2924 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082449648.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -23.622908 kcal Electronic energy + Delta-G solvation = -15215.853717 eV Core-core repulsion = 12689.768669 eV Total energy + Delta-G solvation = -2526.085048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08828 -38.38914 -37.15859 -35.78143 -33.99763 -32.81628 -29.48183 -28.02875 -26.89817 -24.44183 -23.14107 -22.46962 -19.69235 -18.71198 -17.88980 -17.20682 -16.83243 -16.58960 -15.85820 -15.24696 -14.68628 -14.38018 -14.32581 -14.05408 -13.61714 -13.35033 -13.09162 -13.05116 -12.90829 -12.73328 -12.69955 -12.08931 -11.85535 -11.73225 -11.62516 -11.41610 -10.46569 -10.06942 -9.23316 -9.16554 -6.70864 0.16211 1.08601 1.23101 1.40453 1.46651 1.81554 2.05977 2.30554 3.11053 3.47699 3.97605 3.98136 4.25428 4.33284 4.40416 4.52022 4.63026 4.73402 4.80673 4.86292 4.97933 5.06885 5.13350 5.15683 5.21243 5.38286 5.38764 5.47606 5.82685 5.98895 6.17096 6.35670 7.07721 7.81259 8.00212 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033600 B = 0.009981 C = 0.008140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.140638 B = 2804.538013 C = 3438.882676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.120 3.880 4 N -0.356 5.356 5 N -0.369 5.369 6 C 0.134 3.866 7 C -0.078 4.078 8 C -0.362 4.362 9 C 0.000 4.000 10 C -0.397 4.397 11 H 0.059 0.941 12 C 0.048 3.952 13 N -0.795 5.795 14 Si 0.985 3.015 15 H -0.233 1.233 16 H -0.268 1.268 17 H -0.261 1.261 18 C 0.453 3.547 19 O -0.596 6.596 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 1.004 11.123 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.000 4.000 4 N -0.171 5.171 5 N -0.194 5.194 6 C -0.031 4.031 7 C -0.137 4.137 8 C -0.388 4.388 9 C -0.011 4.011 10 C -0.427 4.427 11 H 0.077 0.923 12 C -0.174 4.174 13 N -0.417 5.417 14 Si 0.805 3.195 15 H -0.158 1.158 16 H -0.194 1.194 17 H -0.185 1.185 18 C 0.248 3.752 19 O -0.480 6.480 20 H 0.089 0.911 21 H 0.095 0.905 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.226 0.969 10.864 12.094 hybrid contribution 0.989 0.161 -1.214 1.574 sum -4.236 1.130 9.650 10.599 Atomic orbital electron populations 1.21630 0.91776 1.03075 1.02913 1.21772 0.98680 0.95083 1.01236 1.21907 0.74648 0.99366 1.04123 1.46038 1.08553 1.60762 1.01778 1.70360 1.12066 1.27278 1.09708 1.21570 0.87962 0.95887 0.97721 1.20547 1.00512 1.03641 0.88964 1.21364 0.99605 1.27191 0.90677 1.20156 0.89968 0.95655 0.95351 1.19345 0.97079 1.30366 0.95884 0.92269 1.27203 0.94193 0.96847 0.99203 1.69572 1.07104 1.33640 1.31395 0.85166 0.78969 0.77853 0.77504 1.15768 1.19417 1.18480 1.20289 0.90310 0.80219 0.84385 1.90648 1.70419 1.55421 1.31509 0.91106 0.90464 0.92444 0.91433 0.94743 0.90358 0.87000 0.89862 0.89407 0.89648 0.85890 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.91 71.98 0.71 -2.34 16 2 C -0.13 -4.09 6.25 30.59 0.19 -3.90 16 3 C 0.12 4.31 5.56 86.38 0.48 4.79 16 4 N -0.36 -16.27 3.22 -465.72 -1.50 -17.77 16 5 N -0.37 -15.76 10.68 -47.83 -0.51 -16.27 16 6 C 0.13 5.51 6.84 42.97 0.29 5.81 16 7 C -0.08 -2.23 10.14 71.24 0.72 -1.51 16 8 C -0.36 -17.05 7.14 23.18 0.17 -16.89 16 9 C 0.00 0.00 5.39 -19.57 -0.11 -0.10 16 10 C -0.40 -22.97 9.39 23.29 0.22 -22.75 16 11 H 0.06 3.81 8.00 -2.91 -0.02 3.79 16 12 C 0.05 2.46 5.43 85.36 0.46 2.92 16 13 N -0.79 -40.61 13.92 21.88 0.30 -40.30 16 14 Si 0.98 40.16 24.51 68.60 1.68 41.84 16 15 H -0.23 -8.44 6.62 99.48 0.66 -7.78 16 16 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.26 -11.35 6.86 99.48 0.68 -10.67 16 18 C 0.45 24.61 7.70 86.75 0.67 25.28 16 19 O -0.60 -35.19 16.30 -4.65 -0.08 -35.26 16 20 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 2.94 7.40 -2.38 -0.02 2.92 16 26 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 27 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.12 5.43 4.41 -2.91 -0.01 5.41 16 31 H 0.31 13.71 8.29 -92.71 -0.77 12.94 16 Total: -1.00 -66.76 264.31 4.76 -62.00 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.05 Total: 14.46 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 3.81 Total: -8.69 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.71 Total: -74.34 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.08 Total: -35.26 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.68 Total: 41.84 kcal Total: -66.76 4.76 -62.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082449648.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.372 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds