Wall clock time and date at job start Mon Mar 30 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47839 * 120.00358 * 2 1 3 5 5 H 1.07997 * 120.00319 * 119.99777 * 4 2 1 6 6 C 1.37879 * 119.99589 * 300.00438 * 4 2 1 7 7 N 1.31521 * 120.00300 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00024 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47408 * 59.99561 * 8 6 4 10 10 H 1.48505 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47024 * 299.99486 * 8 6 4 12 12 C 1.50706 * 109.46967 * 240.00377 * 2 1 3 13 13 C 1.34689 * 125.89685 * 245.02128 * 12 2 1 14 14 C 1.40875 * 107.51309 * 180.19457 * 13 12 2 15 15 C 1.35979 * 107.59754 * 0.12083 * 14 13 12 16 16 N 1.36430 * 107.63296 * 359.59082 * 15 14 13 17 17 C 1.47510 * 107.94812 * 180.75798 * 16 15 14 18 18 C 1.54618 * 102.40391 * 15.28263 * 17 16 15 19 19 O 1.36254 * 140.68208 * 179.12267 * 15 14 13 20 20 H 1.08999 * 109.46800 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46807 * 299.99481 * 1 2 3 22 22 H 1.08996 * 109.47669 * 59.99859 * 1 2 3 23 23 H 1.00893 * 111.00169 * 180.02562 * 3 2 1 24 24 H 1.00903 * 110.99424 * 303.95986 * 3 2 1 25 25 H 0.96999 * 120.00175 * 180.02562 * 7 6 4 26 26 H 1.08003 * 126.24428 * 0.23107 * 13 12 2 27 27 H 1.08005 * 126.20154 * 179.84774 * 14 13 12 28 28 H 1.08994 * 110.82412 * 133.51615 * 17 16 15 29 29 H 1.08999 * 110.81525 * 257.05787 * 17 16 15 30 30 H 1.08996 * 110.83385 * 93.21612 * 18 17 16 31 31 H 1.09004 * 110.83471 * 216.59420 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0325 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3216 -1.1204 4.0078 9 1 3.8066 -1.1210 4.0080 10 1 1.8272 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0323 -0.7104 -1.2306 13 6 2.7299 -1.8624 -1.2479 14 6 3.0025 -2.1726 -2.5948 15 6 2.4596 -1.1893 -3.3612 16 7 1.8580 -0.2967 -2.5230 17 6 1.2505 0.7640 -3.3487 18 6 1.2565 0.1311 -4.7594 19 8 2.3346 -0.8177 -4.6661 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 3.0283 1.4119 -0.0004 24 1 1.6441 1.9013 -0.7814 25 1 0.7095 1.1616 3.4845 26 1 3.0258 -2.4428 -0.3865 27 1 3.5481 -3.0330 -2.9534 28 1 0.2319 0.9736 -3.0223 29 1 1.8591 1.6681 -3.3271 30 1 0.3120 -0.3739 -4.9617 31 1 1.4628 0.8833 -5.5209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084351404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:53 Heat of formation + Delta-G solvation = 43.406484 kcal Electronic energy + Delta-G solvation = -15606.592895 eV Core-core repulsion = 13083.414459 eV Total energy + Delta-G solvation = -2523.178436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.65957 -37.79964 -34.99579 -32.62253 -31.42231 -28.46614 -27.78779 -26.51277 -25.10007 -23.07531 -20.90621 -20.20207 -18.79896 -17.00460 -16.09113 -15.76249 -15.28268 -14.46170 -14.12116 -13.90547 -13.64583 -13.00393 -12.75573 -12.52057 -12.19582 -11.92341 -11.64057 -11.22984 -10.85107 -10.76378 -10.62008 -10.32919 -10.18749 -9.86671 -8.92818 -8.37726 -8.06800 -7.31448 -6.77966 -5.85751 -4.01437 2.79500 3.19342 3.37222 3.41363 3.44953 3.54364 3.77517 4.40049 4.48584 4.80583 5.09094 5.23934 5.36424 5.50752 5.73123 6.10858 6.11937 6.29309 6.43912 6.72608 6.93152 7.03015 7.09181 7.20066 7.70503 7.79904 7.84717 7.95073 8.15716 8.34943 8.64383 8.95273 9.10720 9.66812 11.15552 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.047682 B = 0.008914 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.084265 B = 3140.452744 C = 3527.743358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.307 3.693 3 N -0.802 5.802 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.084 3.916 7 N -0.848 5.848 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.056 3.944 13 C -0.176 4.176 14 C -0.196 4.196 15 C 0.133 3.867 16 N -0.494 5.494 17 C 0.073 3.927 18 C 0.045 3.955 19 O -0.294 6.294 20 H 0.033 0.967 21 H 0.096 0.904 22 H -0.003 1.003 23 H 0.322 0.678 24 H 0.289 0.711 25 H 0.255 0.745 26 H 0.149 0.851 27 H 0.130 0.870 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 0.132 -10.552 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.215 3.785 3 N -0.327 5.327 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.122 4.122 7 N -0.483 5.483 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.203 1.203 12 C -0.053 4.053 13 C -0.200 4.200 14 C -0.222 4.222 15 C -0.018 4.018 16 N -0.186 5.186 17 C -0.049 4.049 18 C -0.031 4.031 19 O -0.206 6.206 20 H 0.052 0.948 21 H 0.114 0.886 22 H 0.016 0.984 23 H 0.133 0.867 24 H 0.099 0.901 25 H 0.065 0.935 26 H 0.167 0.833 27 H 0.148 0.852 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.007 0.624 -9.873 9.944 hybrid contribution 0.628 -0.509 -0.265 0.851 sum -0.379 0.115 -10.138 10.146 Atomic orbital electron populations 1.21766 0.96767 0.99237 1.00269 1.17188 0.91726 0.83850 0.85687 1.59271 1.11766 1.14740 1.46917 1.20797 1.33826 1.12368 0.88990 0.91863 1.24896 0.94461 0.94369 0.98487 1.70015 1.34501 1.21276 1.22528 0.86765 0.79316 0.79788 0.82618 1.20316 1.21462 1.20313 1.22315 1.02860 0.97579 0.82537 1.20606 1.06015 0.98481 0.94877 1.19911 1.11513 0.99096 0.91644 1.20228 1.06846 0.95607 0.79094 1.45815 1.45868 1.20118 1.06796 1.23041 1.00687 0.91480 0.89649 1.24050 0.91023 0.91377 0.96633 1.86992 1.51231 1.60476 1.21890 0.94817 0.88583 0.98352 0.86678 0.90056 0.93478 0.83324 0.85246 0.88381 0.89346 0.90289 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.49 37.16 0.32 -2.61 16 2 C 0.31 7.39 0.79 -133.90 -0.11 7.28 16 3 N -0.80 -18.58 8.17 -1.13 -0.01 -18.59 16 4 C -0.52 -13.78 7.94 -34.44 -0.27 -14.06 16 5 H 0.06 1.66 5.66 -52.49 -0.30 1.36 16 6 C 0.08 2.25 5.23 -17.82 -0.09 2.16 16 7 N -0.85 -23.46 10.80 55.43 0.60 -22.86 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.06 1.24 5.88 -81.62 -0.48 0.76 16 13 C -0.18 -3.82 9.85 -39.84 -0.39 -4.21 16 14 C -0.20 -3.88 10.89 -39.40 -0.43 -4.31 16 15 C 0.13 2.58 8.27 -16.32 -0.13 2.44 16 16 N -0.49 -9.49 3.74 -110.64 -0.41 -9.91 16 17 C 0.07 1.04 7.81 -2.64 -0.02 1.02 16 18 C 0.05 0.55 8.07 38.01 0.31 0.85 16 19 O -0.29 -4.96 11.19 -20.55 -0.23 -5.19 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 22 H 0.00 -0.06 7.62 -51.93 -0.40 -0.45 16 23 H 0.32 7.43 8.98 -39.30 -0.35 7.07 16 24 H 0.29 6.03 8.69 -39.29 -0.34 5.69 16 25 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 26 H 0.15 3.20 6.41 -52.48 -0.34 2.86 16 27 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 28 H 0.10 1.30 7.62 -51.93 -0.40 0.91 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 257.97 15.07 3.89 3.89 Total: -1.00 -29.88 257.97 -6.18 -36.06 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -3.68 Total: 11.41 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.31 Total: -10.66 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.18 Total: -51.36 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.23 Total: -5.19 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.88 -6.18 -36.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.467 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds