Wall clock time and date at job start Mon Mar 30 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46904 * 109.47266 * 2 1 4 4 C 1.50698 * 109.47839 * 120.00358 * 2 1 3 5 5 H 1.07997 * 120.00319 * 119.99777 * 4 2 1 6 6 C 1.37879 * 119.99589 * 300.00438 * 4 2 1 7 7 N 1.31521 * 120.00300 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00024 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47408 * 59.99561 * 8 6 4 10 10 H 1.48505 * 109.47203 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47024 * 299.99486 * 8 6 4 12 12 C 1.50706 * 109.46967 * 240.00377 * 2 1 3 13 13 C 1.34689 * 125.89685 * 245.02128 * 12 2 1 14 14 C 1.40875 * 107.51309 * 180.19457 * 13 12 2 15 15 C 1.35979 * 107.59754 * 0.12083 * 14 13 12 16 16 N 1.36430 * 107.63296 * 359.59082 * 15 14 13 17 17 C 1.47510 * 107.94812 * 180.75798 * 16 15 14 18 18 C 1.54618 * 102.40391 * 15.28263 * 17 16 15 19 19 O 1.36254 * 140.68208 * 179.12267 * 15 14 13 20 20 H 1.08999 * 109.46800 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46807 * 299.99481 * 1 2 3 22 22 H 1.08996 * 109.47669 * 59.99859 * 1 2 3 23 23 H 1.00893 * 111.00169 * 180.02562 * 3 2 1 24 24 H 1.00903 * 110.99424 * 303.95986 * 3 2 1 25 25 H 0.96999 * 120.00175 * 180.02562 * 7 6 4 26 26 H 1.08003 * 126.24428 * 0.23107 * 13 12 2 27 27 H 1.08005 * 126.20154 * 179.84774 * 14 13 12 28 28 H 1.08994 * 110.82412 * 133.51615 * 17 16 15 29 29 H 1.08999 * 110.81525 * 257.05787 * 17 16 15 30 30 H 1.08996 * 110.83385 * 93.21612 * 18 17 16 31 31 H 1.09004 * 110.83471 * 216.59420 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0325 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3216 -1.1204 4.0078 9 1 3.8066 -1.1210 4.0080 10 1 1.8272 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0323 -0.7104 -1.2306 13 6 2.7299 -1.8624 -1.2479 14 6 3.0025 -2.1726 -2.5948 15 6 2.4596 -1.1893 -3.3612 16 7 1.8580 -0.2967 -2.5230 17 6 1.2505 0.7640 -3.3487 18 6 1.2565 0.1311 -4.7594 19 8 2.3346 -0.8177 -4.6661 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 3.0283 1.4119 -0.0004 24 1 1.6441 1.9013 -0.7814 25 1 0.7095 1.1616 3.4845 26 1 3.0258 -2.4428 -0.3865 27 1 3.5481 -3.0330 -2.9534 28 1 0.2319 0.9736 -3.0223 29 1 1.8591 1.6681 -3.3271 30 1 0.3120 -0.3739 -4.9617 31 1 1.4628 0.8833 -5.5209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:53 Heat of formation + Delta-G solvation = 21.882919 kcal Electronic energy + Delta-G solvation = -15607.526226 eV Core-core repulsion = 13083.414459 eV Total energy + Delta-G solvation = -2524.111768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.07030 -39.23046 -36.79333 -33.96915 -33.37294 -29.95339 -29.39600 -28.16502 -27.07142 -24.26139 -22.62020 -21.71423 -20.37552 -18.28466 -17.95148 -17.21242 -16.80097 -16.21846 -15.85086 -15.45776 -14.97563 -14.62618 -14.28642 -13.97425 -13.85086 -13.34837 -13.08824 -12.88219 -12.73375 -12.57818 -12.41330 -12.14760 -11.83186 -11.57580 -10.87032 -10.41133 -9.56017 -9.08141 -8.37225 -7.88538 -6.08879 1.31333 1.49569 1.49939 1.56100 1.82229 2.11153 2.36862 2.53785 3.32654 3.36168 3.85483 3.91878 4.18784 4.31711 4.41543 4.54808 4.65446 4.84529 4.87473 4.97772 5.11970 5.29029 5.39152 5.49222 5.78952 5.96089 6.12705 6.28943 6.41113 6.62161 6.80896 7.07785 7.24413 7.61947 9.10974 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.047682 B = 0.008914 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.084265 B = 3140.452744 C = 3527.743358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.307 3.693 3 N -0.808 5.808 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.042 3.958 7 N -0.871 5.871 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.033 3.967 13 C -0.191 4.191 14 C -0.214 4.214 15 C 0.142 3.858 16 N -0.496 5.496 17 C 0.061 3.939 18 C 0.047 3.953 19 O -0.302 6.302 20 H 0.023 0.977 21 H 0.070 0.930 22 H 0.019 0.981 23 H 0.320 0.680 24 H 0.304 0.696 25 H 0.253 0.747 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 0.494 -12.146 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.215 3.785 3 N -0.334 5.334 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.161 4.161 7 N -0.507 5.507 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.077 4.077 13 C -0.215 4.215 14 C -0.240 4.240 15 C -0.011 4.011 16 N -0.188 5.188 17 C -0.059 4.059 18 C -0.027 4.027 19 O -0.214 6.214 20 H 0.042 0.958 21 H 0.089 0.911 22 H 0.038 0.962 23 H 0.131 0.869 24 H 0.115 0.885 25 H 0.062 0.938 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.099 0.997 -11.495 11.590 hybrid contribution 0.623 -0.586 0.108 0.862 sum -0.476 0.412 -11.387 11.404 Atomic orbital electron populations 1.21597 0.97014 0.98440 0.99975 1.16983 0.91457 0.84158 0.85943 1.59132 1.11667 1.14731 1.47894 1.21119 1.33524 1.12430 0.90391 0.92497 1.25497 0.94779 0.95056 1.00791 1.70135 1.35462 1.22364 1.22720 0.85891 0.78642 0.78821 0.79717 1.20273 1.21322 1.20059 1.21853 1.04362 0.98170 0.83283 1.20664 1.06446 0.98693 0.95704 1.20075 1.12499 1.00411 0.90978 1.20381 1.05382 0.95080 0.80259 1.45947 1.45654 1.21223 1.05929 1.23480 1.01289 0.91124 0.90029 1.24474 0.90611 0.91346 0.96301 1.86997 1.52976 1.61346 1.20072 0.95782 0.91124 0.96212 0.86880 0.88517 0.93797 0.84412 0.83392 0.87390 0.87756 0.88643 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.34 8.49 71.98 0.61 -4.73 16 2 C 0.31 14.73 0.79 2.04 0.00 14.73 16 3 N -0.81 -37.12 8.17 -157.50 -1.29 -38.40 16 4 C -0.54 -28.66 7.94 25.60 0.20 -28.45 16 5 H 0.06 3.05 5.66 -2.91 -0.02 3.03 16 6 C 0.04 2.28 5.23 84.65 0.44 2.73 16 7 N -0.87 -48.52 10.80 21.45 0.23 -48.29 16 8 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.03 1.46 5.88 40.97 0.24 1.70 16 13 C -0.19 -8.31 9.85 22.10 0.22 -8.09 16 14 C -0.21 -8.31 10.89 22.39 0.24 -8.06 16 15 C 0.14 5.20 8.27 83.45 0.69 5.89 16 16 N -0.50 -18.16 3.74 -614.29 -2.29 -20.46 16 17 C 0.06 1.53 7.81 86.74 0.68 2.21 16 18 C 0.05 0.94 8.07 72.53 0.59 1.53 16 19 O -0.30 -9.21 11.19 -96.45 -1.08 -10.29 16 20 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 22 H 0.02 0.80 7.62 -2.39 -0.02 0.79 16 23 H 0.32 14.72 8.98 -89.70 -0.81 13.92 16 24 H 0.30 12.28 8.69 -89.69 -0.78 11.50 16 25 H 0.25 13.66 8.31 -92.71 -0.77 12.88 16 26 H 0.14 6.11 6.41 -2.91 -0.02 6.09 16 27 H 0.15 4.96 8.06 -2.91 -0.02 4.93 16 28 H 0.11 2.51 7.62 -2.39 -0.02 2.50 16 29 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.16 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -63.57 257.97 1.09 -62.49 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.42 Total: 30.25 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 3.91 Total: -20.55 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.35 Total: -107.15 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.08 Total: -10.29 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -63.57 1.09 -62.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.369 kcal (2) G-P(sol) polarization free energy of solvation -63.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds