Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47242 * 2 1 4 4 C 1.50693 * 109.47001 * 239.99713 * 2 1 3 5 5 H 1.07998 * 120.00486 * 241.32783 * 4 2 1 6 6 C 1.37878 * 120.00054 * 61.32028 * 4 2 1 7 7 N 1.31512 * 119.99984 * 5.63511 * 6 4 2 8 8 Si 1.86802 * 119.99993 * 185.90496 * 6 4 2 9 9 H 1.48496 * 109.47300 * 264.82247 * 8 6 4 10 10 H 1.48491 * 109.47105 * 24.82624 * 8 6 4 11 11 H 1.48504 * 109.46752 * 144.82482 * 8 6 4 12 12 C 1.50699 * 109.46923 * 119.99834 * 2 1 3 13 13 C 1.34696 * 125.89675 * 119.69006 * 12 2 1 14 14 C 1.40873 * 107.51488 * 180.11540 * 13 12 2 15 15 C 1.35987 * 107.59127 * 0.46524 * 14 13 12 16 16 N 1.36418 * 107.63534 * 359.39950 * 15 14 13 17 17 C 1.47514 * 107.94338 * 180.73788 * 16 15 14 18 18 C 1.54613 * 102.40058 * 15.35402 * 17 16 15 19 19 O 1.36257 * 140.67478 * 179.04278 * 15 14 13 20 20 H 1.08991 * 109.47222 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46551 * 300.00507 * 1 2 3 22 22 H 1.09003 * 109.46755 * 59.99653 * 1 2 3 23 23 H 1.00903 * 111.00030 * 186.28974 * 3 2 1 24 24 H 1.00903 * 110.99748 * 310.23664 * 3 2 1 25 25 H 0.97004 * 120.00195 * 180.26760 * 7 6 4 26 26 H 1.07999 * 126.24583 * 0.24474 * 13 12 2 27 27 H 1.08003 * 126.20672 * 180.22962 * 14 13 12 28 28 H 1.09000 * 110.81901 * 133.58161 * 17 16 15 29 29 H 1.09001 * 110.82048 * 256.92999 * 17 16 15 30 30 H 1.08997 * 110.83257 * 93.19163 * 18 17 16 31 31 H 1.09004 * 110.83419 * 216.56911 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6354 -1.6009 -1.1315 6 6 1.7219 -0.2238 -2.4825 7 7 1.0827 0.9191 -2.6039 8 14 2.2024 -1.1916 -4.0063 9 1 3.4992 -0.6869 -4.5247 10 1 2.3341 -2.6291 -3.6585 11 1 1.1558 -1.0279 -5.0470 12 6 2.0323 -0.7104 1.2305 13 6 2.8051 -1.8135 1.2454 14 6 3.0410 -2.1477 2.5935 15 6 2.3899 -1.2351 3.3631 16 7 1.7774 -0.3497 2.5253 17 6 1.0834 0.6544 3.3538 18 6 1.7214 0.4353 4.7450 19 8 2.1562 -0.9346 4.6715 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 3.0231 1.4138 -0.1032 24 1 1.5666 1.9287 -0.7191 25 1 0.8608 1.2597 -3.4846 26 1 3.1778 -2.3438 0.3816 27 1 3.6289 -2.9802 2.9509 28 1 1.2837 1.6622 2.9900 29 1 0.0112 0.4600 3.3810 30 1 2.5696 1.1039 4.8921 31 1 0.9830 0.5689 5.5356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084351406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = 34.550819 kcal Electronic energy + Delta-G solvation = -15597.950813 eV Core-core repulsion = 13074.388367 eV Total energy + Delta-G solvation = -2523.562446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.50280 -37.67862 -35.15573 -32.42200 -31.34695 -28.31257 -27.73823 -26.44770 -25.19277 -22.92152 -20.93599 -20.10110 -18.63983 -16.82798 -16.21114 -15.66741 -15.24191 -14.46068 -14.02638 -13.72221 -13.29183 -13.02111 -12.81377 -12.38868 -12.03468 -11.82417 -11.50955 -11.34315 -10.98553 -10.78388 -10.56108 -10.31447 -10.17375 -9.82477 -9.48407 -8.66395 -7.92737 -7.24098 -6.77164 -6.10640 -4.23890 2.94225 3.22964 3.30827 3.34044 3.40321 3.70478 3.86856 4.33130 4.58543 4.97659 5.13671 5.25499 5.48154 5.70040 5.92293 6.13186 6.34613 6.41144 6.59932 6.79921 6.93067 7.03818 7.13511 7.42221 7.66902 7.79931 7.86430 7.95676 8.09436 8.36809 8.73236 8.93639 9.12496 9.48653 10.86728 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.047666 B = 0.008906 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.282417 B = 3143.104720 C = 3529.538513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.292 3.708 3 N -0.849 5.849 4 C -0.532 4.532 5 H 0.066 0.934 6 C 0.067 3.933 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.286 1.286 12 C 0.108 3.892 13 C -0.187 4.187 14 C -0.198 4.198 15 C 0.131 3.869 16 N -0.479 5.479 17 C 0.079 3.921 18 C 0.044 3.956 19 O -0.296 6.296 20 H 0.033 0.967 21 H 0.012 0.988 22 H 0.078 0.922 23 H 0.318 0.682 24 H 0.356 0.644 25 H 0.264 0.736 26 H 0.146 0.854 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 0.608 8.892 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.200 3.800 3 N -0.379 5.379 4 C -0.572 4.572 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.212 1.212 12 C -0.001 4.001 13 C -0.211 4.211 14 C -0.223 4.223 15 C -0.020 4.020 16 N -0.169 5.169 17 C -0.042 4.042 18 C -0.032 4.032 19 O -0.208 6.208 20 H 0.052 0.948 21 H 0.031 0.969 22 H 0.097 0.903 23 H 0.127 0.873 24 H 0.173 0.827 25 H 0.074 0.926 26 H 0.164 0.836 27 H 0.146 0.854 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.611 0.976 9.680 9.748 hybrid contribution 0.427 -0.519 -1.795 1.916 sum -0.184 0.457 7.885 7.901 Atomic orbital electron populations 1.21693 0.97033 0.99267 1.00086 1.16906 0.91226 0.86106 0.85747 1.59441 1.09296 1.13303 1.55901 1.21825 1.32828 1.12162 0.90355 0.91570 1.24948 0.94525 0.94920 0.99102 1.69670 1.41033 1.18852 1.23924 0.86468 0.78024 0.80622 0.82259 1.20791 1.19662 1.21195 1.20752 1.00774 0.97035 0.81493 1.20532 1.05883 0.99738 0.94898 1.19824 1.08440 1.02773 0.91290 1.20216 1.04077 0.98628 0.79085 1.45630 1.41432 1.23372 1.06425 1.22968 0.97585 0.94626 0.89050 1.24068 0.99397 0.82588 0.97178 1.86977 1.84966 1.27680 1.21146 0.94758 0.96908 0.90345 0.87332 0.82731 0.92600 0.83627 0.85369 0.87792 0.89722 0.90355 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.44 37.16 0.31 -2.61 16 2 C 0.29 7.07 0.89 -133.91 -0.12 6.95 16 3 N -0.85 -19.80 8.80 -1.14 -0.01 -19.81 16 4 C -0.53 -13.83 7.87 -34.44 -0.27 -14.10 16 5 H 0.07 1.72 5.64 -52.49 -0.30 1.43 16 6 C 0.07 1.73 5.19 -17.82 -0.09 1.63 16 7 N -0.90 -23.39 9.76 55.43 0.54 -22.85 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.11 2.47 5.93 -81.63 -0.48 1.98 16 13 C -0.19 -4.14 9.86 -39.84 -0.39 -4.53 16 14 C -0.20 -4.01 10.89 -39.39 -0.43 -4.44 16 15 C 0.13 2.64 8.27 -16.32 -0.13 2.51 16 16 N -0.48 -9.73 3.74 -110.63 -0.41 -10.14 16 17 C 0.08 1.24 7.92 -2.64 -0.02 1.22 16 18 C 0.04 0.57 8.07 38.01 0.31 0.88 16 19 O -0.30 -5.20 11.19 -20.56 -0.23 -5.43 16 20 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.01 0.27 7.97 -51.93 -0.41 -0.15 16 22 H 0.08 2.00 6.40 -51.93 -0.33 1.67 16 23 H 0.32 7.48 8.95 -39.29 -0.35 7.13 16 24 H 0.36 8.76 6.85 -39.29 -0.27 8.49 16 25 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 26 H 0.15 3.18 6.37 -52.49 -0.33 2.84 16 27 H 0.13 2.27 8.06 -52.48 -0.42 1.84 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 256.95 15.07 3.87 3.87 Total: -1.00 -28.08 256.95 -6.25 -34.34 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -3.67 Total: 15.03 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.32 Total: -10.51 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.12 Total: -52.80 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.23 Total: -5.43 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.08 -6.25 -34.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.890 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds