Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47242 * 2 1 4 4 C 1.50693 * 109.47001 * 239.99713 * 2 1 3 5 5 H 1.07998 * 120.00486 * 241.32783 * 4 2 1 6 6 C 1.37878 * 120.00054 * 61.32028 * 4 2 1 7 7 N 1.31512 * 119.99984 * 5.63511 * 6 4 2 8 8 Si 1.86802 * 119.99993 * 185.90496 * 6 4 2 9 9 H 1.48496 * 109.47300 * 264.82247 * 8 6 4 10 10 H 1.48491 * 109.47105 * 24.82624 * 8 6 4 11 11 H 1.48504 * 109.46752 * 144.82482 * 8 6 4 12 12 C 1.50699 * 109.46923 * 119.99834 * 2 1 3 13 13 C 1.34696 * 125.89675 * 119.69006 * 12 2 1 14 14 C 1.40873 * 107.51488 * 180.11540 * 13 12 2 15 15 C 1.35987 * 107.59127 * 0.46524 * 14 13 12 16 16 N 1.36418 * 107.63534 * 359.39950 * 15 14 13 17 17 C 1.47514 * 107.94338 * 180.73788 * 16 15 14 18 18 C 1.54613 * 102.40058 * 15.35402 * 17 16 15 19 19 O 1.36257 * 140.67478 * 179.04278 * 15 14 13 20 20 H 1.08991 * 109.47222 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46551 * 300.00507 * 1 2 3 22 22 H 1.09003 * 109.46755 * 59.99653 * 1 2 3 23 23 H 1.00903 * 111.00030 * 186.28974 * 3 2 1 24 24 H 1.00903 * 110.99748 * 310.23664 * 3 2 1 25 25 H 0.97004 * 120.00195 * 180.26760 * 7 6 4 26 26 H 1.07999 * 126.24583 * 0.24474 * 13 12 2 27 27 H 1.08003 * 126.20672 * 180.22962 * 14 13 12 28 28 H 1.09000 * 110.81901 * 133.58161 * 17 16 15 29 29 H 1.09001 * 110.82048 * 256.92999 * 17 16 15 30 30 H 1.08997 * 110.83257 * 93.19163 * 18 17 16 31 31 H 1.09004 * 110.83419 * 216.56911 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6354 -1.6009 -1.1315 6 6 1.7219 -0.2238 -2.4825 7 7 1.0827 0.9191 -2.6039 8 14 2.2024 -1.1916 -4.0063 9 1 3.4992 -0.6869 -4.5247 10 1 2.3341 -2.6291 -3.6585 11 1 1.1558 -1.0279 -5.0470 12 6 2.0323 -0.7104 1.2305 13 6 2.8051 -1.8135 1.2454 14 6 3.0410 -2.1477 2.5935 15 6 2.3899 -1.2351 3.3631 16 7 1.7774 -0.3497 2.5253 17 6 1.0834 0.6544 3.3538 18 6 1.7214 0.4353 4.7450 19 8 2.1562 -0.9346 4.6715 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 3.0231 1.4138 -0.1032 24 1 1.5666 1.9287 -0.7191 25 1 0.8608 1.2597 -3.4846 26 1 3.1778 -2.3438 0.3816 27 1 3.6289 -2.9802 2.9509 28 1 1.2837 1.6622 2.9900 29 1 0.0112 0.4600 3.3810 30 1 2.5696 1.1039 4.8921 31 1 0.9830 0.5689 5.5356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = 15.032352 kcal Electronic energy + Delta-G solvation = -15598.797197 eV Core-core repulsion = 13074.388367 eV Total energy + Delta-G solvation = -2524.408830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.97676 -39.17061 -36.97213 -33.82279 -33.28230 -29.84786 -29.38682 -28.14637 -27.13499 -24.19835 -22.66428 -21.66310 -20.25478 -18.25983 -17.98601 -17.24929 -16.78553 -16.21118 -15.55747 -15.36893 -14.98843 -14.54064 -14.34041 -14.02034 -13.64565 -13.30923 -13.19620 -12.83592 -12.78861 -12.63087 -12.42875 -12.15796 -11.70644 -11.56737 -11.32642 -10.63750 -9.48141 -9.16712 -8.37631 -8.06611 -6.26093 1.38609 1.42081 1.44750 1.53865 1.93164 2.16656 2.40701 2.47615 3.13582 3.44957 3.94136 4.00537 4.31679 4.37647 4.52101 4.62753 4.74917 4.87319 4.92019 5.01181 5.07473 5.30035 5.48291 5.61091 5.70953 5.83404 6.12491 6.22669 6.43740 6.68728 6.83641 7.01129 7.16454 7.49317 8.87838 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.047666 B = 0.008906 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.282417 B = 3143.104720 C = 3529.538513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.290 3.710 3 N -0.836 5.836 4 C -0.550 4.550 5 H 0.058 0.942 6 C 0.030 3.970 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.284 1.284 12 C 0.080 3.920 13 C -0.198 4.198 14 C -0.213 4.213 15 C 0.138 3.862 16 N -0.485 5.485 17 C 0.068 3.932 18 C 0.048 3.952 19 O -0.303 6.303 20 H 0.025 0.975 21 H 0.026 0.974 22 H 0.059 0.941 23 H 0.315 0.685 24 H 0.348 0.652 25 H 0.265 0.735 26 H 0.138 0.862 27 H 0.149 0.851 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 0.823 10.184 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.198 3.802 3 N -0.364 5.364 4 C -0.589 4.589 5 H 0.076 0.924 6 C -0.170 4.170 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.210 1.210 12 C -0.030 4.030 13 C -0.223 4.223 14 C -0.238 4.238 15 C -0.015 4.015 16 N -0.174 5.174 17 C -0.053 4.053 18 C -0.026 4.026 19 O -0.214 6.214 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.078 0.922 23 H 0.123 0.877 24 H 0.163 0.837 25 H 0.074 0.926 26 H 0.155 0.845 27 H 0.167 0.833 28 H 0.125 0.875 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.677 1.207 10.999 11.086 hybrid contribution 0.422 -0.541 -2.113 2.221 sum -0.255 0.666 8.886 8.915 Atomic orbital electron populations 1.21548 0.97161 0.98539 0.99719 1.16841 0.91121 0.86166 0.86104 1.59440 1.08882 1.12941 1.55185 1.22049 1.33088 1.12234 0.91575 0.92398 1.25531 0.94647 0.95676 1.01173 1.69748 1.41305 1.19427 1.24329 0.85622 0.77671 0.79301 0.79458 1.20548 1.19864 1.21003 1.20495 1.02386 0.97840 0.82246 1.20613 1.06032 0.99854 0.95761 1.20021 1.09328 1.03876 0.90605 1.20401 1.02940 0.97955 0.80195 1.45804 1.41471 1.24354 1.05766 1.23349 0.98261 0.93857 0.89794 1.24460 1.00968 0.80514 0.96700 1.86980 1.84870 1.30240 1.19345 0.95580 0.95547 0.92216 0.87672 0.83654 0.92575 0.84451 0.83282 0.87478 0.88588 0.88672 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 8.44 71.98 0.61 -4.71 16 2 C 0.29 14.05 0.89 2.04 0.00 14.05 16 3 N -0.84 -38.92 8.80 -157.52 -1.39 -40.31 16 4 C -0.55 -28.84 7.87 25.60 0.20 -28.64 16 5 H 0.06 3.07 5.64 -2.91 -0.02 3.06 16 6 C 0.03 1.55 5.19 84.66 0.44 1.99 16 7 N -0.91 -47.49 9.76 21.45 0.21 -47.28 16 8 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.08 3.62 5.93 40.97 0.24 3.87 16 13 C -0.20 -8.82 9.86 22.10 0.22 -8.60 16 14 C -0.21 -8.46 10.89 22.39 0.24 -8.22 16 15 C 0.14 5.30 8.27 83.46 0.69 5.99 16 16 N -0.48 -18.99 3.74 -614.29 -2.29 -21.28 16 17 C 0.07 1.94 7.92 86.73 0.69 2.63 16 18 C 0.05 1.07 8.07 72.53 0.59 1.65 16 19 O -0.30 -9.71 11.19 -96.48 -1.08 -10.79 16 20 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.03 1.13 7.97 -2.38 -0.02 1.11 16 22 H 0.06 3.05 6.40 -2.39 -0.02 3.04 16 23 H 0.31 14.87 8.95 -89.69 -0.80 14.07 16 24 H 0.35 17.15 6.85 -89.69 -0.61 16.54 16 25 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 26 H 0.14 6.15 6.37 -2.91 -0.02 6.13 16 27 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 28 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.16 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -59.08 256.95 1.14 -57.94 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.26 Total: 37.49 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 3.92 Total: -19.99 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.47 Total: -108.87 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.08 Total: -10.79 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -59.08 1.14 -57.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.972 kcal (2) G-P(sol) polarization free energy of solvation -59.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds