Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47288 * 2 1 4 4 C 1.52995 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47287 * 304.99731 * 4 3 2 6 6 C 1.50706 * 109.47078 * 185.00139 * 4 3 2 7 7 H 1.07991 * 120.00043 * 240.00141 * 6 4 3 8 8 C 1.37877 * 119.99893 * 59.99548 * 6 4 3 9 9 N 1.31513 * 120.00180 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00044 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47323 * 89.99940 * 10 8 6 12 12 H 1.48504 * 109.47267 * 210.00243 * 10 8 6 13 13 H 1.48505 * 109.46872 * 329.99819 * 10 8 6 14 14 C 1.50696 * 109.47430 * 65.00295 * 4 3 2 15 15 C 1.38248 * 119.97128 * 239.99664 * 14 4 3 16 16 C 1.38196 * 120.02483 * 179.97438 * 15 14 4 17 17 C 1.38458 * 119.97492 * 0.02562 * 16 15 14 18 18 F 1.35104 * 120.02786 * 179.97438 * 17 16 15 19 19 C 1.38465 * 119.94675 * 0.24873 * 17 16 15 20 20 C 1.38197 * 119.97511 * 359.47283 * 19 17 16 21 21 H 1.09004 * 109.46936 * 299.99505 * 1 2 3 22 22 H 1.09001 * 109.47089 * 59.99693 * 1 2 3 23 23 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46716 * 239.99745 * 2 1 3 25 25 H 1.09001 * 109.47089 * 120.00307 * 2 1 3 26 26 H 1.08994 * 109.46767 * 60.00337 * 3 2 1 27 27 H 1.09002 * 109.46846 * 300.00443 * 3 2 1 28 28 H 0.96995 * 120.00624 * 179.97438 * 9 8 6 29 29 H 1.08001 * 119.98881 * 0.02562 * 15 14 4 30 30 H 1.07995 * 120.01604 * 180.02562 * 16 15 14 31 31 H 1.08007 * 120.01064 * 179.75151 * 19 17 16 32 32 H 1.07994 * 119.98821 * 180.29814 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0725 2.8578 0.1232 7 1 4.6930 3.2804 -0.6530 8 6 3.7398 3.6133 1.2276 9 7 2.9844 3.0985 2.1731 10 14 4.3620 5.3679 1.3808 11 1 3.3833 6.2962 0.7600 12 1 4.5278 5.7108 2.8162 13 1 5.6698 5.4916 0.6882 14 6 4.0718 0.8422 -1.2886 15 6 4.8666 -0.2886 -1.2600 16 6 5.3270 -0.8403 -2.4405 17 6 4.9923 -0.2597 -3.6522 18 9 5.4423 -0.7978 -4.8069 19 6 4.2009 0.8762 -3.6792 20 6 3.7370 1.4227 -2.4977 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6768 1.9562 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 2.7507 3.6298 2.9503 29 1 5.1272 -0.7416 -0.3149 30 1 5.9475 -1.7239 -2.4181 31 1 3.9426 1.3322 -4.6236 32 1 3.1157 2.3058 -2.5189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084351423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -49.124304 kcal Electronic energy + Delta-G solvation = -14897.774767 eV Core-core repulsion = 12350.663934 eV Total energy + Delta-G solvation = -2547.110833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.41852 -38.67886 -35.17529 -32.50501 -30.86368 -30.53025 -27.47007 -25.15922 -22.72632 -22.32199 -20.84145 -19.31539 -17.13339 -16.40351 -15.62387 -15.12963 -15.11437 -14.30384 -14.11418 -13.32876 -13.10831 -12.89376 -12.81020 -12.52324 -11.79982 -11.60855 -11.35649 -11.05749 -10.77682 -10.66648 -10.52940 -10.29993 -9.96065 -9.69211 -9.41443 -9.01140 -8.51167 -8.39331 -7.72006 -6.06254 -4.13681 1.83606 1.84974 3.26549 3.33990 3.37609 4.25859 4.42311 4.80236 5.22600 5.31400 5.35143 5.79829 5.81372 5.87387 5.94170 6.00802 6.04850 6.43513 6.52818 6.54962 6.67366 6.71117 6.75975 6.87464 6.97134 7.06171 7.23222 7.36517 7.56096 7.70018 7.90867 8.05269 8.33497 8.88891 9.51143 10.98420 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.009310 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.727675 B = 3006.735109 C = 3793.443283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.107 4.107 4 C 0.077 3.923 5 H 0.037 0.963 6 C -0.510 4.510 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.887 5.887 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.034 4.034 15 C -0.106 4.106 16 C -0.156 4.156 17 C 0.059 3.941 18 F -0.155 7.155 19 C -0.157 4.157 20 C -0.086 4.086 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -5.142 -6.003 7.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.145 4.145 4 C 0.058 3.942 5 H 0.055 0.945 6 C -0.548 4.548 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.034 4.034 15 C -0.124 4.124 16 C -0.175 4.175 17 C 0.040 3.960 18 F -0.134 7.134 19 C -0.176 4.176 20 C -0.104 4.104 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.523 -5.114 -5.866 7.800 hybrid contribution 0.443 0.855 -0.110 0.969 sum -0.080 -4.259 -5.976 7.339 Atomic orbital electron populations 1.21751 0.97507 0.99864 1.01246 1.21629 0.94357 0.99937 1.00286 1.21693 0.96938 0.93155 1.02675 1.17947 0.92441 0.95597 0.88168 0.94526 1.21114 1.31363 0.96860 1.05487 0.92426 1.24943 0.94994 0.98226 0.95629 1.69866 1.36499 1.36744 1.09415 0.86600 0.79352 0.84890 0.77246 1.20645 1.21208 1.19890 1.20750 0.92972 0.92224 0.97459 1.21022 0.98043 0.96354 0.97000 1.20997 1.03281 1.01602 0.91579 1.17603 1.01120 0.96020 0.81253 1.91415 1.88081 1.85827 1.48069 1.21082 1.00542 0.96301 0.99662 1.20973 0.99067 0.99531 0.90819 0.93006 0.93551 0.94251 0.93741 0.93013 0.88399 0.94682 0.92874 0.85737 0.85967 0.85923 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.12 -2.35 5.75 -26.73 -0.15 -2.50 16 3 C -0.11 -2.35 4.42 -26.73 -0.12 -2.47 16 4 C 0.08 1.79 1.95 -92.93 -0.18 1.61 16 5 H 0.04 0.92 7.87 -51.93 -0.41 0.51 16 6 C -0.51 -13.22 8.24 -34.44 -0.28 -13.50 16 7 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 8 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 9 N -0.89 -24.04 11.29 55.43 0.63 -23.41 16 10 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 C -0.03 -0.69 3.72 -104.62 -0.39 -1.08 16 15 C -0.11 -1.94 9.67 -39.59 -0.38 -2.33 16 16 C -0.16 -2.61 10.03 -39.52 -0.40 -3.01 16 17 C 0.06 1.02 7.30 -39.42 -0.29 0.73 16 18 F -0.15 -2.61 17.27 2.25 0.04 -2.57 16 19 C -0.16 -2.70 10.03 -39.51 -0.40 -3.09 16 20 C -0.09 -1.63 8.65 -39.59 -0.34 -1.97 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.82 7.38 -51.93 -0.38 0.43 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.03 0.76 7.22 -51.93 -0.37 0.38 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.12 2.12 7.94 -52.49 -0.42 1.70 16 30 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.13 2.47 7.54 -52.49 -0.40 2.07 16 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -26.32 272.88 -7.26 -33.58 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.36 Total: 0.80 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -2.66 Total: -28.07 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.63 Total: -23.41 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.32 -7.26 -33.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.547 kcal (2) G-P(sol) polarization free energy of solvation -26.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds