Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47288 * 2 1 4 4 C 1.52995 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47287 * 304.99731 * 4 3 2 6 6 C 1.50706 * 109.47078 * 185.00139 * 4 3 2 7 7 H 1.07991 * 120.00043 * 240.00141 * 6 4 3 8 8 C 1.37877 * 119.99893 * 59.99548 * 6 4 3 9 9 N 1.31513 * 120.00180 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00044 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47323 * 89.99940 * 10 8 6 12 12 H 1.48504 * 109.47267 * 210.00243 * 10 8 6 13 13 H 1.48505 * 109.46872 * 329.99819 * 10 8 6 14 14 C 1.50696 * 109.47430 * 65.00295 * 4 3 2 15 15 C 1.38248 * 119.97128 * 239.99664 * 14 4 3 16 16 C 1.38196 * 120.02483 * 179.97438 * 15 14 4 17 17 C 1.38458 * 119.97492 * 0.02562 * 16 15 14 18 18 F 1.35104 * 120.02786 * 179.97438 * 17 16 15 19 19 C 1.38465 * 119.94675 * 0.24873 * 17 16 15 20 20 C 1.38197 * 119.97511 * 359.47283 * 19 17 16 21 21 H 1.09004 * 109.46936 * 299.99505 * 1 2 3 22 22 H 1.09001 * 109.47089 * 59.99693 * 1 2 3 23 23 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46716 * 239.99745 * 2 1 3 25 25 H 1.09001 * 109.47089 * 120.00307 * 2 1 3 26 26 H 1.08994 * 109.46767 * 60.00337 * 3 2 1 27 27 H 1.09002 * 109.46846 * 300.00443 * 3 2 1 28 28 H 0.96995 * 120.00624 * 179.97438 * 9 8 6 29 29 H 1.08001 * 119.98881 * 0.02562 * 15 14 4 30 30 H 1.07995 * 120.01604 * 180.02562 * 16 15 14 31 31 H 1.08007 * 120.01064 * 179.75151 * 19 17 16 32 32 H 1.07994 * 119.98821 * 180.29814 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 6 4.0725 2.8578 0.1232 7 1 4.6930 3.2804 -0.6530 8 6 3.7398 3.6133 1.2276 9 7 2.9844 3.0985 2.1731 10 14 4.3620 5.3679 1.3808 11 1 3.3833 6.2962 0.7600 12 1 4.5278 5.7108 2.8162 13 1 5.6698 5.4916 0.6882 14 6 4.0718 0.8422 -1.2886 15 6 4.8666 -0.2886 -1.2600 16 6 5.3270 -0.8403 -2.4405 17 6 4.9923 -0.2597 -3.6522 18 9 5.4423 -0.7978 -4.8069 19 6 4.2009 0.8762 -3.6792 20 6 3.7370 1.4227 -2.4977 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6768 1.9562 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 2.7507 3.6298 2.9503 29 1 5.1272 -0.7416 -0.3149 30 1 5.9475 -1.7239 -2.4181 31 1 3.9426 1.3322 -4.6236 32 1 3.1157 2.3058 -2.5189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -60.414275 kcal Electronic energy + Delta-G solvation = -14898.264337 eV Core-core repulsion = 12350.663934 eV Total energy + Delta-G solvation = -2547.600403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.76459 -40.16938 -36.84345 -34.31656 -32.48138 -31.92923 -29.07902 -26.97495 -24.30297 -23.77397 -22.37584 -20.97465 -18.51415 -18.33160 -17.14359 -16.80560 -16.46594 -16.00868 -15.56823 -14.81371 -14.63383 -14.53008 -14.25685 -13.96024 -13.44915 -13.15361 -12.92092 -12.88541 -12.49861 -12.39203 -12.08344 -11.82882 -11.65479 -11.39433 -11.15592 -10.82436 -10.37961 -9.89952 -9.22850 -8.06400 -6.20038 0.40453 0.44201 1.41959 1.44372 1.53027 2.44041 2.85714 3.20446 3.41944 3.94915 4.07516 4.27782 4.35500 4.41660 4.54703 4.58419 4.62202 4.91684 5.09760 5.12600 5.21092 5.26976 5.29614 5.30543 5.39272 5.49663 5.58286 5.67601 5.77086 6.06093 6.12071 6.22173 6.41907 6.88572 7.47231 8.96448 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.009310 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.727675 B = 3006.735109 C = 3793.443283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.099 4.099 4 C 0.079 3.921 5 H 0.008 0.992 6 C -0.523 4.523 7 H 0.050 0.950 8 C 0.019 3.981 9 N -0.911 5.911 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.272 1.272 14 C -0.055 4.055 15 C -0.112 4.112 16 C -0.146 4.146 17 C 0.059 3.941 18 F -0.149 7.149 19 C -0.150 4.150 20 C -0.095 4.095 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.131 0.869 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -5.742 -7.392 9.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.137 4.137 4 C 0.061 3.939 5 H 0.026 0.974 6 C -0.561 4.561 7 H 0.068 0.932 8 C -0.180 4.180 9 N -0.550 5.550 10 Si 0.774 3.226 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.197 1.197 14 C -0.055 4.055 15 C -0.130 4.130 16 C -0.165 4.165 17 C 0.040 3.960 18 F -0.128 7.128 19 C -0.169 4.169 20 C -0.114 4.114 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.263 -5.718 -7.264 9.248 hybrid contribution 0.403 0.997 0.272 1.109 sum 0.140 -4.721 -6.992 8.438 Atomic orbital electron populations 1.21704 0.95380 1.01538 1.01287 1.21510 0.96204 0.97514 1.00194 1.21507 0.96292 0.95003 1.00860 1.17780 0.93154 0.94050 0.88951 0.97409 1.21413 1.31091 0.98382 1.05217 0.93167 1.25618 0.95317 1.01560 0.95544 1.69991 1.37414 1.37864 1.09762 0.85718 0.78835 0.80992 0.77093 1.20126 1.21053 1.19721 1.20533 0.94804 0.93674 0.96508 1.21103 0.97811 0.95920 0.98159 1.21232 1.02602 1.02048 0.90623 1.17718 1.00789 0.95934 0.81599 1.91436 1.87942 1.85688 1.47739 1.21263 0.99642 0.96048 0.99946 1.20926 0.99656 0.99667 0.91108 0.93679 0.92836 0.91740 0.93017 0.93799 0.91562 0.94881 0.92991 0.85063 0.83035 0.83376 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.91 71.98 0.71 -3.76 16 2 C -0.12 -4.37 5.75 30.59 0.18 -4.19 16 3 C -0.10 -4.44 4.42 30.59 0.14 -4.30 16 4 C 0.08 3.77 1.95 -12.29 -0.02 3.74 16 5 H 0.01 0.41 7.87 -2.39 -0.02 0.39 16 6 C -0.52 -27.64 8.24 25.60 0.21 -27.43 16 7 H 0.05 2.66 7.60 -2.92 -0.02 2.64 16 8 C 0.02 1.00 5.29 84.65 0.45 1.45 16 9 N -0.91 -50.62 11.29 21.45 0.24 -50.37 16 10 Si 0.95 42.63 29.54 68.60 2.03 44.65 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 C -0.06 -2.23 3.72 -19.86 -0.07 -2.30 16 15 C -0.11 -3.96 9.67 22.26 0.22 -3.75 16 16 C -0.15 -4.52 10.03 22.31 0.22 -4.29 16 17 C 0.06 1.86 7.30 22.38 0.16 2.02 16 18 F -0.15 -4.52 17.27 44.97 0.78 -3.75 16 19 C -0.15 -4.81 10.03 22.31 0.22 -4.59 16 20 C -0.10 -3.54 8.65 22.26 0.19 -3.35 16 21 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.05 1.85 7.38 -2.38 -0.02 1.83 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 3.41 5.95 -2.39 -0.01 3.40 16 27 H 0.03 1.45 7.22 -2.39 -0.02 1.43 16 28 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.13 4.38 7.94 -2.91 -0.02 4.36 16 30 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 31 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.13 4.71 7.54 -2.91 -0.02 4.69 16 Total: -1.00 -55.86 272.88 6.74 -49.12 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.09 Total: 11.10 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 2.60 Total: -50.76 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.24 Total: -50.37 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -55.86 6.74 -49.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.294 kcal (2) G-P(sol) polarization free energy of solvation -55.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds