Wall clock time and date at job start Mon Mar 30 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.52998 * 109.47419 * 120.00032 * 2 1 3 5 5 H 1.09001 * 109.47164 * 297.13781 * 4 2 1 6 6 C 1.50703 * 109.47008 * 57.13002 * 4 2 1 7 7 H 1.08000 * 119.99809 * 32.22398 * 6 4 2 8 8 C 1.37881 * 120.00324 * 212.22455 * 6 4 2 9 9 N 1.31516 * 119.99682 * 3.29177 * 8 6 4 10 10 Si 1.86794 * 120.00334 * 183.29178 * 8 6 4 11 11 H 1.48503 * 109.47221 * 270.00008 * 10 8 6 12 12 H 1.48505 * 109.47036 * 29.99673 * 10 8 6 13 13 H 1.48500 * 109.47186 * 149.99923 * 10 8 6 14 14 C 1.50693 * 109.47381 * 177.13138 * 4 2 1 15 15 C 1.38272 * 119.98779 * 120.00175 * 14 4 2 16 16 C 1.38223 * 120.05046 * 180.02562 * 15 14 4 17 17 C 1.38215 * 120.02660 * 359.95591 * 16 15 14 18 18 C 1.38447 * 119.97751 * 0.02562 * 17 16 15 19 19 F 1.35099 * 120.02652 * 179.97438 * 18 17 16 20 20 C 1.38178 * 119.98743 * 299.72891 * 14 4 2 21 21 H 1.09006 * 109.47149 * 303.84550 * 1 2 3 22 22 H 1.08999 * 109.47160 * 63.84781 * 1 2 3 23 23 H 1.09007 * 109.47360 * 183.84686 * 1 2 3 24 24 H 1.08996 * 109.46992 * 239.99991 * 2 1 3 25 25 H 1.08999 * 109.47498 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47241 * 300.00389 * 3 2 1 27 27 H 1.09004 * 109.47063 * 60.00371 * 3 2 1 28 28 H 0.96999 * 120.00208 * 353.62527 * 9 8 6 29 29 H 1.07996 * 119.97105 * 0.02562 * 15 14 4 30 30 H 1.07998 * 119.98819 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.01398 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.01101 * 359.97438 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7192 -0.1786 2.1385 6 6 1.4805 -2.1201 1.2853 7 1 1.2913 -2.6499 0.3634 8 6 1.2101 -2.7235 2.4952 9 7 1.3792 -2.0556 3.6154 10 14 0.6036 -4.4896 2.5433 11 1 -0.8803 -4.5051 2.4860 12 1 1.1516 -5.2330 1.3804 13 1 1.0571 -5.1346 3.8016 14 6 3.5453 -0.7831 1.2141 15 6 4.2848 -0.1965 2.2246 16 6 5.6656 -0.2520 2.1934 17 6 6.3086 -0.8949 1.1525 18 6 5.5693 -1.4830 0.1404 19 9 6.1968 -2.1112 -0.8778 20 6 4.1859 -1.4309 0.1753 21 1 -0.3634 0.5724 0.8536 22 1 -0.3633 0.4529 -0.9224 23 1 -0.3634 -1.0254 0.0689 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.7807 -1.1727 3.5978 29 1 3.7831 0.3054 3.0386 30 1 6.2422 0.2069 2.9829 31 1 7.3875 -0.9385 1.1286 32 1 3.6079 -1.8932 -0.6113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084351426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:29 Heat of formation + Delta-G solvation = -50.270209 kcal Electronic energy + Delta-G solvation = -15256.715551 eV Core-core repulsion = 12709.555027 eV Total energy + Delta-G solvation = -2547.160524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.33644 -38.72969 -35.76226 -32.53662 -30.52709 -29.76171 -26.86397 -26.03434 -23.39797 -22.07502 -21.06468 -19.14474 -17.04770 -16.54961 -15.58426 -15.33091 -15.02699 -14.01557 -13.85673 -13.65872 -13.19934 -12.99556 -12.62305 -12.27468 -11.63215 -11.54590 -11.43275 -11.15230 -10.87832 -10.80275 -10.45773 -10.26120 -10.13756 -9.89631 -9.41660 -8.82755 -8.42393 -8.15540 -7.78602 -6.42263 -4.14002 1.87246 1.99310 3.39293 3.44126 3.58598 4.33983 4.48393 4.87208 5.26004 5.39810 5.47336 5.71854 5.82524 5.83696 5.91082 6.03606 6.16274 6.27541 6.47847 6.53608 6.55699 6.64439 6.74404 6.79786 6.87684 7.00305 7.08765 7.18154 7.31922 7.55494 7.65887 8.10122 8.34995 8.78995 9.55473 10.95297 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.011640 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.145390 B = 2404.902153 C = 2938.626523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.146 4.146 4 C 0.059 3.941 5 H 0.049 0.951 6 C -0.580 4.580 7 H 0.053 0.947 8 C 0.024 3.976 9 N -0.906 5.906 10 Si 1.065 2.935 11 H -0.287 1.287 12 H -0.288 1.288 13 H -0.285 1.285 14 C 0.003 3.997 15 C -0.142 4.142 16 C -0.095 4.095 17 C -0.188 4.188 18 C 0.085 3.915 19 F -0.153 7.153 20 C -0.144 4.144 21 H 0.042 0.958 22 H 0.030 0.970 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 4.049 -4.468 7.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.098 4.098 3 C -0.204 4.204 4 C 0.040 3.960 5 H 0.067 0.933 6 C -0.618 4.618 7 H 0.072 0.928 8 C -0.181 4.181 9 N -0.542 5.542 10 Si 0.893 3.107 11 H -0.213 1.213 12 H -0.214 1.214 13 H -0.210 1.210 14 C 0.003 3.997 15 C -0.161 4.161 16 C -0.113 4.113 17 C -0.207 4.207 18 C 0.066 3.934 19 F -0.132 7.132 20 C -0.163 4.163 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.753 2.839 -3.477 5.851 hybrid contribution 0.850 0.952 -1.121 1.699 sum 4.603 3.791 -4.598 7.530 Atomic orbital electron populations 1.21672 0.95646 1.02569 0.98809 1.21085 0.95628 0.93930 0.99156 1.21912 1.00518 0.97644 1.00302 1.18221 0.85765 0.97303 0.94688 0.93291 1.21821 1.45828 0.99121 0.94997 0.92843 1.25790 0.95189 1.04822 0.92283 1.70773 1.40424 1.14348 1.28628 0.83593 0.76439 0.74893 0.75729 1.21348 1.21363 1.21035 1.20737 0.99092 0.89394 0.90520 1.21157 0.93359 1.01882 0.99656 1.20841 0.94714 0.98630 0.97147 1.20796 0.99498 1.04270 0.96156 1.17792 0.91132 0.97708 0.86732 1.91417 1.82893 1.80604 1.58280 1.20921 0.91285 1.02592 1.01533 0.93891 0.95112 0.91195 0.92698 0.93377 0.94087 0.93363 0.91728 0.86404 0.86300 0.86196 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.98 37.16 0.33 -2.14 16 2 C -0.08 -1.57 2.36 -90.62 -0.21 -1.79 16 3 C -0.15 -2.53 8.98 37.16 0.33 -2.20 16 4 C 0.06 1.35 1.45 -92.93 -0.13 1.22 16 5 H 0.05 1.21 6.10 -51.93 -0.32 0.89 16 6 C -0.58 -14.95 6.46 -34.44 -0.22 -15.17 16 7 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 8 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 9 N -0.91 -25.87 13.61 55.43 0.75 -25.12 16 10 Si 1.07 24.52 29.90 -169.99 -5.08 19.43 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.00 0.07 3.65 -104.64 -0.38 -0.31 16 15 C -0.14 -2.83 9.67 -39.57 -0.38 -3.21 16 16 C -0.10 -1.66 10.04 -39.60 -0.40 -2.06 16 17 C -0.19 -3.31 10.03 -39.51 -0.40 -3.70 16 18 C 0.09 1.66 7.30 -39.41 -0.29 1.37 16 19 F -0.15 -2.90 17.27 2.25 0.04 -2.86 16 20 C -0.14 -3.03 8.76 -39.51 -0.35 -3.38 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.45 6.99 -51.93 -0.36 1.08 16 24 H 0.05 1.10 7.31 -51.93 -0.38 0.72 16 25 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.27 7.59 6.55 -40.82 -0.27 7.33 16 29 H 0.12 2.28 7.94 -52.49 -0.42 1.86 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.13 2.66 7.57 -52.49 -0.40 2.26 16 LS Contribution 271.51 15.07 4.09 4.09 Total: -1.00 -27.51 271.51 -6.65 -34.16 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.26 Total: 1.09 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -2.19 Total: -30.80 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.75 Total: -25.12 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.51 -6.65 -34.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.106 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds