Wall clock time and date at job start Mon Mar 30 2020 02:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.52998 * 109.47419 * 120.00032 * 2 1 3 5 5 H 1.09001 * 109.47164 * 297.13781 * 4 2 1 6 6 C 1.50703 * 109.47008 * 57.13002 * 4 2 1 7 7 H 1.08000 * 119.99809 * 32.22398 * 6 4 2 8 8 C 1.37881 * 120.00324 * 212.22455 * 6 4 2 9 9 N 1.31516 * 119.99682 * 3.29177 * 8 6 4 10 10 Si 1.86794 * 120.00334 * 183.29178 * 8 6 4 11 11 H 1.48503 * 109.47221 * 270.00008 * 10 8 6 12 12 H 1.48505 * 109.47036 * 29.99673 * 10 8 6 13 13 H 1.48500 * 109.47186 * 149.99923 * 10 8 6 14 14 C 1.50693 * 109.47381 * 177.13138 * 4 2 1 15 15 C 1.38272 * 119.98779 * 120.00175 * 14 4 2 16 16 C 1.38223 * 120.05046 * 180.02562 * 15 14 4 17 17 C 1.38215 * 120.02660 * 359.95591 * 16 15 14 18 18 C 1.38447 * 119.97751 * 0.02562 * 17 16 15 19 19 F 1.35099 * 120.02652 * 179.97438 * 18 17 16 20 20 C 1.38178 * 119.98743 * 299.72891 * 14 4 2 21 21 H 1.09006 * 109.47149 * 303.84550 * 1 2 3 22 22 H 1.08999 * 109.47160 * 63.84781 * 1 2 3 23 23 H 1.09007 * 109.47360 * 183.84686 * 1 2 3 24 24 H 1.08996 * 109.46992 * 239.99991 * 2 1 3 25 25 H 1.08999 * 109.47498 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47241 * 300.00389 * 3 2 1 27 27 H 1.09004 * 109.47063 * 60.00371 * 3 2 1 28 28 H 0.96999 * 120.00208 * 353.62527 * 9 8 6 29 29 H 1.07996 * 119.97105 * 0.02562 * 15 14 4 30 30 H 1.07998 * 119.98819 * 179.97438 * 16 15 14 31 31 H 1.08001 * 120.01398 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.01101 * 359.97438 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7192 -0.1786 2.1385 6 6 1.4805 -2.1201 1.2853 7 1 1.2913 -2.6499 0.3634 8 6 1.2101 -2.7235 2.4952 9 7 1.3792 -2.0556 3.6154 10 14 0.6036 -4.4896 2.5433 11 1 -0.8803 -4.5051 2.4860 12 1 1.1516 -5.2330 1.3804 13 1 1.0571 -5.1346 3.8016 14 6 3.5453 -0.7831 1.2141 15 6 4.2848 -0.1965 2.2246 16 6 5.6656 -0.2520 2.1934 17 6 6.3086 -0.8949 1.1525 18 6 5.5693 -1.4830 0.1404 19 9 6.1968 -2.1112 -0.8778 20 6 4.1859 -1.4309 0.1753 21 1 -0.3634 0.5724 0.8536 22 1 -0.3633 0.4529 -0.9224 23 1 -0.3634 -1.0254 0.0689 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.7807 -1.1727 3.5978 29 1 3.7831 0.3054 3.0386 30 1 6.2422 0.2069 2.9829 31 1 7.3875 -0.9385 1.1286 32 1 3.6079 -1.8932 -0.6113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:28 Heat of formation + Delta-G solvation = -63.035884 kcal Electronic energy + Delta-G solvation = -15257.269112 eV Core-core repulsion = 12709.555027 eV Total energy + Delta-G solvation = -2547.714085 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.84346 -40.30855 -37.38636 -34.44413 -32.09595 -31.29350 -28.55288 -27.62536 -25.27011 -23.61532 -22.62345 -20.81052 -18.87786 -18.15225 -17.08914 -16.89230 -16.53903 -15.71106 -15.65498 -15.29405 -14.78970 -14.54270 -14.18480 -13.96046 -13.22053 -13.05492 -12.89820 -12.80649 -12.65335 -12.41730 -12.08615 -11.95887 -11.84551 -11.49407 -11.11982 -10.66882 -10.43942 -9.69998 -9.38378 -8.52150 -6.23039 0.33183 0.48903 1.52576 1.60109 1.76133 2.56434 2.81827 3.25303 3.38130 3.93991 3.99683 4.19522 4.28541 4.32260 4.41035 4.55818 4.63504 4.85032 4.95998 4.97405 5.03906 5.13962 5.20509 5.24433 5.33199 5.40696 5.50813 5.58490 5.71651 5.82601 6.10581 6.19114 6.28944 6.72849 7.52039 8.86283 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.011640 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.145390 B = 2404.902153 C = 2938.626523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.137 4.137 4 C 0.059 3.941 5 H 0.024 0.976 6 C -0.578 4.578 7 H 0.043 0.957 8 C -0.023 4.023 9 N -0.937 5.937 10 Si 1.102 2.898 11 H -0.274 1.274 12 H -0.277 1.277 13 H -0.289 1.289 14 C -0.016 4.016 15 C -0.156 4.156 16 C -0.084 4.084 17 C -0.177 4.177 18 C 0.078 3.922 19 F -0.151 7.151 20 C -0.162 4.162 21 H 0.037 0.963 22 H 0.060 0.940 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.263 0.737 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 4.512 -4.975 8.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.099 4.099 3 C -0.194 4.194 4 C 0.041 3.959 5 H 0.042 0.958 6 C -0.616 4.616 7 H 0.062 0.938 8 C -0.223 4.223 9 N -0.575 5.575 10 Si 0.926 3.074 11 H -0.199 1.199 12 H -0.202 1.202 13 H -0.215 1.215 14 C -0.017 4.017 15 C -0.175 4.175 16 C -0.102 4.102 17 C -0.195 4.195 18 C 0.059 3.941 19 F -0.130 7.130 20 C -0.181 4.181 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.061 3.312 -4.008 7.256 hybrid contribution 0.513 0.858 -1.021 1.429 sum 5.574 4.170 -5.029 8.587 Atomic orbital electron populations 1.21617 0.95202 1.01297 1.00163 1.21057 0.96034 0.95373 0.97387 1.21801 1.00298 0.95826 1.01504 1.18132 0.87108 0.95742 0.94961 0.95807 1.22059 1.44930 1.00353 0.94255 0.93823 1.26873 0.95564 1.07513 0.92315 1.70860 1.42746 1.14542 1.29348 0.83109 0.76902 0.71667 0.75759 1.19948 1.20224 1.21451 1.20548 0.98236 0.91115 0.91768 1.21302 0.94834 1.02196 0.99126 1.21234 0.93698 0.97440 0.97803 1.21209 1.01258 1.02293 0.94760 1.17917 0.90707 0.98014 0.87426 1.91421 1.82638 1.80599 1.58292 1.20872 0.92319 1.03422 1.01473 0.94381 0.92087 0.93510 0.93121 0.93617 0.91617 0.93351 0.92621 0.86640 0.82364 0.82599 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.98 71.98 0.65 -4.11 16 2 C -0.08 -3.16 2.36 -10.80 -0.03 -3.19 16 3 C -0.14 -4.57 8.98 71.98 0.65 -3.92 16 4 C 0.06 2.77 1.45 -12.29 -0.02 2.75 16 5 H 0.02 1.22 6.10 -2.39 -0.01 1.21 16 6 C -0.58 -30.46 6.46 25.60 0.17 -30.30 16 7 H 0.04 2.33 7.81 -2.91 -0.02 2.30 16 8 C -0.02 -1.29 5.46 84.66 0.46 -0.83 16 9 N -0.94 -54.77 13.61 21.45 0.29 -54.48 16 10 Si 1.10 49.86 29.90 68.60 2.05 51.91 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 14 C -0.02 -0.69 3.65 -19.87 -0.07 -0.76 16 15 C -0.16 -6.09 9.67 22.27 0.22 -5.87 16 16 C -0.08 -2.67 10.04 22.26 0.22 -2.45 16 17 C -0.18 -5.60 10.03 22.31 0.22 -5.37 16 18 C 0.08 2.91 7.30 22.38 0.16 3.08 16 19 F -0.15 -5.42 17.27 44.97 0.78 -4.64 16 20 C -0.16 -6.76 8.76 22.31 0.20 -6.56 16 21 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 1.95 6.99 -2.38 -0.02 1.94 16 24 H 0.05 2.03 7.31 -2.39 -0.02 2.01 16 25 H 0.04 1.53 7.31 -2.39 -0.02 1.51 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.26 15.24 6.55 -92.71 -0.61 14.63 16 29 H 0.12 4.48 7.94 -2.91 -0.02 4.45 16 30 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 32 H 0.12 4.95 7.57 -2.91 -0.02 4.93 16 Total: -1.00 -59.32 271.51 7.20 -52.12 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.25 Total: 12.62 kcal Atomic # 6 Polarization: -60.36 SS G_CDS: 2.83 Total: -57.53 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.29 Total: -54.48 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.78 Total: -4.64 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.91 kcal Total: -59.32 7.20 -52.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.914 kcal (2) G-P(sol) polarization free energy of solvation -59.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds