Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47702 * 2 1 4 4 C 1.53002 * 109.46990 * 119.99859 * 2 1 3 5 5 H 1.08996 * 109.47302 * 304.81239 * 4 2 1 6 6 C 1.50705 * 109.46978 * 184.80898 * 4 2 1 7 7 H 1.07994 * 120.00507 * 325.07463 * 6 4 2 8 8 C 1.37876 * 119.99458 * 145.07424 * 6 4 2 9 9 N 1.31520 * 119.99736 * 184.98048 * 8 6 4 10 10 Si 1.86800 * 120.00378 * 4.98012 * 8 6 4 11 11 H 1.48500 * 109.47117 * 84.70113 * 10 8 6 12 12 H 1.48495 * 109.47327 * 204.69797 * 10 8 6 13 13 H 1.48501 * 109.47294 * 324.70166 * 10 8 6 14 14 C 1.50704 * 109.46972 * 64.81316 * 4 2 1 15 15 C 1.38261 * 119.98523 * 59.72700 * 14 4 2 16 16 C 1.38228 * 120.04865 * 179.72577 * 15 14 4 17 17 C 1.38222 * 120.02340 * 0.54922 * 16 15 14 18 18 C 1.38440 * 119.97453 * 359.72193 * 17 16 15 19 19 F 1.35103 * 120.02388 * 180.02562 * 18 17 16 20 20 C 1.38178 * 119.98283 * 239.99645 * 14 4 2 21 21 H 1.09005 * 109.47126 * 300.00411 * 1 2 3 22 22 H 1.09007 * 109.46960 * 59.99881 * 1 2 3 23 23 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47126 * 239.99589 * 2 1 3 25 25 H 1.08993 * 109.47703 * 185.07614 * 3 2 1 26 26 H 1.09007 * 109.46814 * 305.07566 * 3 2 1 27 27 H 1.08999 * 109.46897 * 65.06728 * 3 2 1 28 28 H 0.96999 * 119.99605 * 180.02562 * 9 8 6 29 29 H 1.07995 * 119.97883 * 359.97438 * 15 14 4 30 30 H 1.07997 * 119.99042 * 180.26865 * 16 15 14 31 31 H 1.07996 * 120.01451 * 179.70529 * 17 16 15 32 32 H 1.07999 * 120.01360 * 0.02648 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6079 -0.2596 2.1371 6 6 3.5423 -0.6189 1.3103 7 1 4.1221 -0.6350 0.3993 8 6 4.1764 -0.5047 2.5292 9 7 5.4772 -0.3170 2.5786 10 14 3.1882 -0.6165 4.1104 11 1 3.0162 -2.0426 4.4869 12 1 3.9073 0.0985 5.1952 13 1 1.8554 0.0058 3.9062 14 6 1.6373 -2.1723 1.1911 15 6 2.0646 -2.9665 0.1431 16 6 1.7007 -4.2991 0.0915 17 6 0.8997 -4.8362 1.0817 18 6 0.4667 -4.0404 2.1285 19 9 -0.3158 -4.5645 3.0971 20 6 0.8366 -2.7070 2.1822 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1262 1.4438 -0.0909 26 1 1.6044 1.9819 -0.8411 27 1 1.7528 1.9294 0.9319 28 1 5.9234 -0.2370 3.4362 29 1 2.6864 -2.5465 -0.6335 30 1 2.0386 -4.9196 -0.7253 31 1 0.6116 -5.8761 1.0386 32 1 0.4990 -2.0852 2.9982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = -58.521688 kcal Electronic energy + Delta-G solvation = -15279.372127 eV Core-core repulsion = 12731.853792 eV Total energy + Delta-G solvation = -2547.518335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.85220 -40.30347 -37.27590 -34.37434 -32.35548 -31.29287 -29.19597 -27.65144 -24.99737 -23.64223 -22.64618 -20.41896 -19.05942 -18.08646 -17.06800 -16.95924 -16.59032 -16.35860 -15.54047 -15.13383 -14.65835 -14.44955 -14.19164 -14.03945 -13.60609 -13.08912 -13.02386 -12.82931 -12.77326 -12.45948 -12.04403 -11.86403 -11.78784 -11.43731 -11.23039 -10.94309 -10.65936 -9.73622 -9.37319 -8.28833 -6.28060 0.34401 0.47244 1.28392 1.32756 1.36421 2.31182 2.81048 3.08299 3.37742 3.90236 4.03623 4.22624 4.30681 4.38524 4.45472 4.56421 4.63322 4.92178 4.96087 5.02913 5.08631 5.17415 5.25102 5.27510 5.34422 5.44195 5.56159 5.58519 5.65256 5.80158 5.87906 6.12560 6.36429 6.76961 7.34930 8.87021 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.012925 C = 0.010346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.458055 B = 2165.787345 C = 2705.635616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.127 4.127 4 C 0.037 3.963 5 H 0.040 0.960 6 C -0.479 4.479 7 H 0.047 0.953 8 C 0.023 3.977 9 N -0.943 5.943 10 Si 0.909 3.091 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.241 1.241 14 C -0.023 4.023 15 C -0.128 4.128 16 C -0.084 4.084 17 C -0.173 4.173 18 C 0.079 3.921 19 F -0.152 7.152 20 C -0.192 4.192 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.263 0.737 29 H 0.125 0.875 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 -4.727 -4.580 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 C -0.184 4.184 4 C 0.018 3.982 5 H 0.058 0.942 6 C -0.517 4.517 7 H 0.066 0.934 8 C -0.174 4.174 9 N -0.584 5.584 10 Si 0.735 3.265 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.165 1.165 14 C -0.024 4.024 15 C -0.146 4.146 16 C -0.102 4.102 17 C -0.191 4.191 18 C 0.060 3.940 19 F -0.131 7.131 20 C -0.211 4.211 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.759 -4.708 -4.416 12.547 hybrid contribution 0.139 -0.019 1.435 1.442 sum -10.621 -4.727 -2.980 12.001 Atomic orbital electron populations 1.21832 0.94888 1.01289 1.01699 1.21023 0.95085 0.96147 0.97195 1.21618 1.00642 0.95669 1.00483 1.18580 0.94527 0.88283 0.96784 0.94235 1.21005 0.90400 1.47358 0.92940 0.93445 1.25661 0.95323 0.94763 1.01681 1.70009 1.10192 1.51882 1.26282 0.86328 0.80602 0.78891 0.80683 1.20053 1.21669 1.16482 1.20494 0.90885 0.98705 0.92268 1.21182 1.00158 0.94282 0.98958 1.21322 0.95685 0.94681 0.98512 1.21251 1.02122 1.01103 0.94639 1.17894 0.95109 0.92496 0.88523 1.91425 1.72643 1.86938 1.62052 1.21101 1.03585 0.94546 1.01863 0.93394 0.91337 0.93279 0.91946 0.94135 0.91823 0.94205 0.92777 0.85682 0.82081 0.82600 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.01 71.98 0.65 -3.55 16 2 C -0.08 -2.76 2.39 -10.79 -0.03 -2.79 16 3 C -0.13 -4.57 8.76 71.98 0.63 -3.94 16 4 C 0.04 1.61 1.16 -12.28 -0.01 1.60 16 5 H 0.04 1.79 4.88 -2.39 -0.01 1.78 16 6 C -0.48 -25.28 7.10 25.60 0.18 -25.10 16 7 H 0.05 2.74 8.05 -2.91 -0.02 2.72 16 8 C 0.02 1.31 5.47 84.65 0.46 1.78 16 9 N -0.94 -57.37 13.96 21.45 0.30 -57.07 16 10 Si 0.91 43.98 26.66 68.60 1.83 45.81 16 11 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.24 -10.72 6.06 99.48 0.60 -10.12 16 14 C -0.02 -0.92 3.55 -19.87 -0.07 -0.99 16 15 C -0.13 -4.56 8.76 22.27 0.20 -4.36 16 16 C -0.08 -2.44 10.04 22.26 0.22 -2.22 16 17 C -0.17 -5.07 10.03 22.31 0.22 -4.85 16 18 C 0.08 2.76 7.30 22.38 0.16 2.92 16 19 F -0.15 -5.22 17.27 44.97 0.78 -4.44 16 20 C -0.19 -7.47 9.06 22.31 0.20 -7.27 16 21 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 23 H 0.05 1.47 7.37 -2.39 -0.02 1.45 16 24 H 0.06 2.23 7.21 -2.38 -0.02 2.22 16 25 H 0.04 1.67 7.28 -2.39 -0.02 1.65 16 26 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.13 4.43 7.53 -2.91 -0.02 4.41 16 30 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.12 4.48 7.77 -2.91 -0.02 4.46 16 Total: -1.00 -60.88 267.87 6.72 -54.16 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.99 Total: 10.30 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 2.82 Total: -48.76 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.30 Total: -57.07 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.83 Total: 45.81 kcal Total: -60.88 6.72 -54.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.361 kcal (2) G-P(sol) polarization free energy of solvation -60.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds