Wall clock time and date at job start Mon Mar 30 2020 02:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47328 * 2 1 4 4 C 1.52995 * 109.47433 * 120.00511 * 2 1 3 5 5 H 1.09004 * 109.46930 * 298.47194 * 4 2 1 6 6 C 1.50693 * 109.47236 * 58.47502 * 4 2 1 7 7 H 1.08000 * 120.00340 * 27.17204 * 6 4 2 8 8 C 1.37879 * 119.99947 * 207.17700 * 6 4 2 9 9 N 1.31514 * 119.99895 * 5.80963 * 8 6 4 10 10 Si 1.86800 * 119.99995 * 185.81507 * 8 6 4 11 11 H 1.48505 * 109.47065 * 59.99671 * 10 8 6 12 12 H 1.48499 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47196 * 299.99627 * 10 8 6 14 14 C 1.50703 * 109.47148 * 178.47736 * 4 2 1 15 15 C 1.38239 * 119.97855 * 120.00037 * 14 4 2 16 16 C 1.38204 * 120.02859 * 180.02562 * 15 14 4 17 17 C 1.38459 * 119.97307 * 0.22531 * 16 15 14 18 18 F 1.35099 * 120.02746 * 179.72953 * 17 16 15 19 19 C 1.38465 * 119.94536 * 359.49845 * 17 16 15 20 20 C 1.38199 * 119.97584 * 0.52271 * 19 17 16 21 21 H 1.09007 * 109.46869 * 294.51617 * 1 2 3 22 22 H 1.08996 * 109.47119 * 54.51203 * 1 2 3 23 23 H 1.08993 * 109.46977 * 174.51470 * 1 2 3 24 24 H 1.08998 * 109.46998 * 240.00611 * 2 1 3 25 25 H 1.08995 * 109.47340 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47342 * 300.00785 * 3 2 1 27 27 H 1.08999 * 109.47038 * 60.00080 * 3 2 1 28 28 H 0.97006 * 119.99909 * 180.02562 * 9 8 6 29 29 H 1.08005 * 119.98750 * 0.02562 * 15 14 4 30 30 H 1.07993 * 120.01163 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.01131 * 180.25456 * 19 17 16 32 32 H 1.08000 * 119.98859 * 179.74535 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6993 -0.1920 2.1390 6 6 1.5071 -2.1308 1.2681 7 1 1.2612 -2.6276 0.3413 8 6 1.3335 -2.7860 2.4687 9 7 1.5234 -2.1449 3.6012 10 14 0.8287 -4.5844 2.4868 11 1 1.8549 -5.3937 1.7815 12 1 0.7104 -5.0513 3.8915 13 1 -0.4798 -4.7382 1.8018 14 6 3.5466 -0.7541 1.2303 15 6 4.2632 -0.1616 2.2533 16 6 5.6448 -0.1905 2.2368 17 6 6.3114 -0.8092 1.1927 18 9 7.6620 -0.8334 1.1727 19 6 5.5925 -1.4073 0.1716 20 6 4.2109 -1.3767 0.1900 21 1 -0.3633 0.4265 0.9351 22 1 -0.3633 0.5966 -0.8367 23 1 -0.3633 -1.0229 -0.0982 24 1 1.8933 -0.5137 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.4016 -2.6060 4.4459 29 1 3.7431 0.3242 3.0657 30 1 6.2044 0.2728 3.0359 31 1 6.1112 -1.8938 -0.6412 32 1 3.6500 -1.8396 -0.6085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:32 Heat of formation + Delta-G solvation = -59.712932 kcal Electronic energy + Delta-G solvation = -15145.584338 eV Core-core repulsion = 12598.014347 eV Total energy + Delta-G solvation = -2547.569991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.72869 -40.14420 -37.10021 -34.27729 -31.84232 -31.61741 -28.66727 -27.44052 -25.08254 -23.80058 -22.43255 -20.36750 -18.48801 -18.44114 -16.92949 -16.58455 -16.43489 -16.29543 -15.23199 -14.88234 -14.74024 -14.24040 -14.10078 -13.72038 -13.50614 -13.03349 -12.88539 -12.86414 -12.73948 -12.41253 -11.96393 -11.90371 -11.74494 -11.37637 -10.99097 -10.76911 -10.48378 -9.82482 -9.12165 -8.08094 -6.14252 0.50900 0.52670 1.42610 1.44733 1.49808 2.45066 2.93650 3.26029 3.48061 4.00018 4.11112 4.28719 4.42873 4.47201 4.65179 4.65875 4.74379 4.98558 5.12182 5.12319 5.17755 5.23848 5.35117 5.42744 5.44442 5.55140 5.65313 5.69318 5.80754 5.89835 6.11620 6.25329 6.44177 6.97811 7.50504 8.98970 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.021864 B = 0.011204 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.364072 B = 2498.611076 C = 3251.881886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.138 4.138 4 C 0.073 3.927 5 H 0.029 0.971 6 C -0.505 4.505 7 H 0.057 0.943 8 C 0.020 3.980 9 N -0.916 5.916 10 Si 0.937 3.063 11 H -0.275 1.275 12 H -0.292 1.292 13 H -0.269 1.269 14 C -0.038 4.038 15 C -0.108 4.108 16 C -0.155 4.155 17 C 0.049 3.951 18 F -0.152 7.152 19 C -0.153 4.153 20 C -0.099 4.099 21 H 0.034 0.966 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.258 0.742 29 H 0.115 0.885 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 3.861 -5.997 8.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 C -0.195 4.195 4 C 0.054 3.946 5 H 0.047 0.953 6 C -0.543 4.543 7 H 0.075 0.925 8 C -0.179 4.179 9 N -0.555 5.555 10 Si 0.764 3.236 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.194 1.194 14 C -0.039 4.039 15 C -0.126 4.126 16 C -0.173 4.173 17 C 0.030 3.970 18 F -0.131 7.131 19 C -0.172 4.172 20 C -0.117 4.117 21 H 0.053 0.947 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.933 3.836 -5.801 7.990 hybrid contribution -0.043 -1.143 0.654 1.318 sum 3.890 2.693 -5.147 6.991 Atomic orbital electron populations 1.21582 0.95439 1.00952 1.00052 1.21123 0.95814 0.95303 0.97912 1.21802 1.00286 0.96184 1.01214 1.17986 0.86786 0.95134 0.94654 0.95313 1.21234 1.41684 0.99253 0.92129 0.92503 1.25600 0.95565 1.00980 0.95780 1.70024 1.50672 1.37206 0.97559 0.85927 0.79007 0.81981 0.76681 1.20031 1.21750 1.19427 1.20765 0.98593 0.92114 0.92385 1.20977 0.92812 1.00157 0.98690 1.21186 0.94965 1.02427 0.98765 1.17673 0.76353 1.04549 0.98440 1.91411 1.29537 1.95383 1.96780 1.21248 0.94629 1.02065 0.99230 1.20927 0.92839 0.98726 0.99184 0.94728 0.92195 0.93630 0.92300 0.93661 0.91743 0.93767 0.93261 0.86707 0.84123 0.83432 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.81 71.98 0.63 -3.79 16 2 C -0.08 -3.11 2.34 -10.80 -0.03 -3.14 16 3 C -0.14 -4.45 8.97 71.98 0.65 -3.81 16 4 C 0.07 3.32 1.59 -12.29 -0.02 3.30 16 5 H 0.03 1.49 7.19 -2.38 -0.02 1.48 16 6 C -0.51 -25.45 6.72 25.60 0.17 -25.28 16 7 H 0.06 2.81 7.75 -2.91 -0.02 2.79 16 8 C 0.02 1.07 5.45 84.66 0.46 1.53 16 9 N -0.92 -51.30 12.88 21.45 0.28 -51.02 16 10 Si 0.94 42.45 29.54 68.60 2.03 44.48 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 C -0.04 -1.61 3.58 -19.86 -0.07 -1.68 16 15 C -0.11 -4.44 9.67 22.26 0.22 -4.22 16 16 C -0.15 -5.64 10.03 22.31 0.22 -5.42 16 17 C 0.05 1.75 7.30 22.38 0.16 1.91 16 18 F -0.15 -5.18 17.27 44.97 0.78 -4.40 16 19 C -0.15 -5.29 10.03 22.31 0.22 -5.07 16 20 C -0.10 -3.78 8.80 22.26 0.20 -3.59 16 21 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.04 1.75 7.33 -2.39 -0.02 1.73 16 24 H 0.06 2.14 7.34 -2.39 -0.02 2.12 16 25 H 0.04 1.48 7.26 -2.39 -0.02 1.46 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 29 H 0.11 4.84 7.94 -2.91 -0.02 4.81 16 30 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.13 4.74 7.56 -2.91 -0.02 4.72 16 Total: -1.00 -55.28 273.68 6.99 -48.29 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.09 Total: 11.91 kcal Atomic # 6 Polarization: -52.07 SS G_CDS: 2.82 Total: -49.25 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.28 Total: -51.02 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -55.28 6.99 -48.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.425 kcal (2) G-P(sol) polarization free energy of solvation -55.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds