Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47497 * 119.99718 * 2 1 3 5 5 H 1.09001 * 109.47079 * 301.92099 * 4 2 1 6 6 C 1.50701 * 109.47458 * 181.91967 * 4 2 1 7 7 H 1.08000 * 119.99890 * 324.53724 * 6 4 2 8 8 C 1.37873 * 119.99788 * 144.52978 * 6 4 2 9 9 N 1.31515 * 120.00224 * 5.38699 * 8 6 4 10 10 Si 1.86801 * 119.99616 * 185.38448 * 8 6 4 11 11 H 1.48493 * 109.47349 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47172 * 120.00447 * 10 8 6 13 13 H 1.48504 * 109.46852 * 239.99907 * 10 8 6 14 14 C 1.50704 * 109.46920 * 61.91930 * 4 2 1 15 15 C 1.38223 * 120.01040 * 60.00350 * 14 4 2 16 16 C 1.38222 * 120.02189 * 179.97438 * 15 14 4 17 17 C 1.38269 * 120.05306 * 0.02562 * 16 15 14 18 18 C 1.38176 * 120.02352 * 359.97438 * 17 16 15 19 19 C 1.38435 * 120.01414 * 239.98142 * 14 4 2 20 20 F 1.35106 * 120.02636 * 0.04381 * 19 14 4 21 21 H 1.09005 * 109.46655 * 299.99896 * 1 2 3 22 22 H 1.08999 * 109.47212 * 60.00121 * 1 2 3 23 23 H 1.08996 * 109.46774 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47112 * 239.99828 * 2 1 3 25 25 H 1.09005 * 109.47346 * 176.66827 * 3 2 1 26 26 H 1.09005 * 109.46555 * 296.65993 * 3 2 1 27 27 H 1.08994 * 109.47335 * 56.65818 * 3 2 1 28 28 H 0.97005 * 119.99949 * 179.97438 * 9 8 6 29 29 H 1.07995 * 119.98733 * 359.97438 * 15 14 4 30 30 H 1.07999 * 119.97150 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.98548 * 179.72056 * 17 16 15 32 32 H 1.08008 * 120.01109 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6489 -0.2276 2.1389 6 6 3.5464 -0.6801 1.2733 7 1 4.1031 -0.7438 0.3500 8 6 4.2136 -0.5610 2.4739 9 7 3.5428 -0.5898 3.6048 10 14 6.0705 -0.3587 2.4942 11 1 6.5836 -0.3566 1.1007 12 1 6.4214 0.9254 3.1523 13 1 6.6828 -1.4836 3.2460 14 6 1.5770 -2.1551 1.2258 15 6 1.9502 -2.9852 0.1854 16 6 1.5260 -4.3005 0.1639 17 6 0.7277 -4.7874 1.1824 18 6 0.3534 -3.9594 2.2234 19 6 0.7781 -2.6416 2.2463 20 9 0.4123 -1.8310 3.2634 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1285 1.4431 0.0597 26 1 1.7264 1.9387 -0.9185 27 1 1.6287 1.9734 0.8585 28 1 4.0124 -0.5064 4.4495 29 1 2.5734 -2.6058 -0.6108 30 1 1.8185 -4.9485 -0.6491 31 1 0.3931 -5.8141 1.1622 32 1 -0.2706 -4.3398 3.0187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084351441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = -59.665003 kcal Electronic energy + Delta-G solvation = -15485.746824 eV Core-core repulsion = 12938.178911 eV Total energy + Delta-G solvation = -2547.567912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.48700 -39.95098 -37.28729 -34.29789 -32.03765 -31.10482 -28.80772 -27.56392 -25.25053 -23.51168 -22.39662 -20.37072 -18.49204 -18.25206 -16.90088 -16.61505 -16.40883 -16.17941 -15.23045 -14.82700 -14.77575 -14.37711 -13.83479 -13.60690 -13.46167 -12.96248 -12.91192 -12.84649 -12.70828 -12.37337 -12.15850 -11.84256 -11.80160 -11.37083 -11.04918 -10.81579 -10.51743 -9.56503 -9.15330 -8.07788 -6.17589 0.52077 0.66439 1.38893 1.41563 1.51782 2.43047 2.97750 3.23729 3.74849 4.07562 4.19716 4.35212 4.37693 4.44186 4.56977 4.66130 4.80999 4.92014 5.08213 5.10130 5.15134 5.28349 5.35401 5.46883 5.51723 5.60059 5.66107 5.68882 5.75456 5.85621 6.04031 6.31844 6.38530 6.96335 7.47258 8.98718 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.012493 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.096242 B = 2240.788401 C = 2667.978277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 C -0.125 4.125 4 C 0.068 3.932 5 H 0.025 0.975 6 C -0.502 4.502 7 H 0.059 0.941 8 C 0.012 3.988 9 N -0.917 5.917 10 Si 0.947 3.053 11 H -0.260 1.260 12 H -0.284 1.284 13 H -0.288 1.288 14 C -0.073 4.073 15 C -0.107 4.107 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.168 4.168 19 C 0.052 3.948 20 F -0.160 7.160 21 H 0.034 0.966 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.257 0.743 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -5.111 -7.426 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.182 4.182 4 C 0.049 3.951 5 H 0.043 0.957 6 C -0.540 4.540 7 H 0.078 0.922 8 C -0.187 4.187 9 N -0.556 5.556 10 Si 0.773 3.227 11 H -0.183 1.183 12 H -0.210 1.210 13 H -0.214 1.214 14 C -0.075 4.075 15 C -0.125 4.125 16 C -0.148 4.148 17 C -0.134 4.134 18 C -0.186 4.186 19 C 0.033 3.967 20 F -0.139 7.139 21 H 0.053 0.947 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.144 0.856 30 H 0.172 0.828 31 H 0.178 0.822 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.758 -5.052 -7.198 9.999 hybrid contribution 0.988 0.482 1.049 1.519 sum -3.770 -4.570 -6.149 8.539 Atomic orbital electron populations 1.21787 0.95910 1.00683 1.00961 1.21128 0.94497 0.96464 0.97941 1.21614 1.01170 0.95543 0.99920 1.17959 0.94717 0.87646 0.94785 0.95689 1.21256 0.91382 1.48953 0.92412 0.92233 1.25755 1.02100 0.95149 0.95671 1.70157 1.36785 1.50942 0.97681 0.85674 0.81276 0.77246 0.78519 1.18330 1.20982 1.21443 1.20787 0.93146 1.00458 0.93078 1.20993 0.99482 0.93959 0.98026 1.21484 0.98335 0.95085 0.99873 1.21166 0.98660 1.00358 0.93211 1.21317 1.03716 0.91710 1.01891 1.18139 1.01274 0.89864 0.87460 1.91389 1.90174 1.73657 1.58639 0.94686 0.91209 0.93889 0.91892 0.93207 0.91877 0.95113 0.93426 0.85600 0.82825 0.82208 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.97 71.98 0.65 -4.24 16 2 C -0.08 -3.32 2.35 -10.79 -0.03 -3.34 16 3 C -0.13 -4.85 8.99 71.98 0.65 -4.20 16 4 C 0.07 3.35 1.62 -12.28 -0.02 3.33 16 5 H 0.02 1.45 6.36 -2.39 -0.02 1.43 16 6 C -0.50 -26.67 6.52 25.60 0.17 -26.51 16 7 H 0.06 3.07 7.82 -2.91 -0.02 3.04 16 8 C 0.01 0.68 5.45 84.65 0.46 1.15 16 9 N -0.92 -54.94 12.84 21.45 0.28 -54.66 16 10 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 14 C -0.07 -3.35 3.61 -19.82 -0.07 -3.42 16 15 C -0.11 -4.09 8.80 22.26 0.20 -3.90 16 16 C -0.13 -3.99 10.04 22.27 0.22 -3.77 16 17 C -0.12 -3.45 10.04 22.26 0.22 -3.23 16 18 C -0.17 -6.08 10.03 22.31 0.22 -5.86 16 19 C 0.05 2.36 7.25 22.37 0.16 2.52 16 20 F -0.16 -8.18 16.20 44.97 0.73 -7.45 16 21 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.04 1.55 7.28 -2.39 -0.02 1.53 16 24 H 0.06 2.41 7.32 -2.38 -0.02 2.40 16 25 H 0.05 2.07 7.04 -2.38 -0.02 2.05 16 26 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 29 H 0.13 4.61 7.56 -2.91 -0.02 4.59 16 30 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -63.68 271.98 6.95 -56.72 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.09 Total: 10.98 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 2.83 Total: -51.48 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.28 Total: -54.66 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.73 Total: -7.45 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -63.68 6.95 -56.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.944 kcal (2) G-P(sol) polarization free energy of solvation -63.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds