Wall clock time and date at job start Mon Mar 30 2020 02:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47366 * 2 1 4 4 H 1.09007 * 109.46710 * 305.62602 * 3 2 1 5 5 C 1.50694 * 109.47167 * 65.62428 * 3 2 1 6 6 H 1.07998 * 119.99864 * 28.17424 * 5 3 2 7 7 C 1.37878 * 119.99858 * 208.16533 * 5 3 2 8 8 N 1.31514 * 120.00168 * 6.21599 * 7 5 3 9 9 Si 1.86799 * 119.99784 * 186.21691 * 7 5 3 10 10 H 1.48494 * 109.47365 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47297 * 120.00435 * 9 7 5 12 12 H 1.48501 * 109.47307 * 240.00044 * 9 7 5 13 13 C 1.50704 * 109.46974 * 185.63083 * 3 2 1 14 14 C 1.38266 * 119.97120 * 299.99030 * 13 3 2 15 15 C 1.38176 * 120.02231 * 180.02562 * 14 13 3 16 16 C 1.38474 * 119.97680 * 359.97438 * 15 14 13 17 17 F 1.35104 * 120.02929 * 179.72566 * 16 15 14 18 18 C 1.38438 * 119.95088 * 359.97438 * 16 15 14 19 19 C 1.50698 * 120.01693 * 179.97438 * 18 16 15 20 20 C 1.38220 * 119.97196 * 0.02562 * 18 16 15 21 21 H 1.09001 * 109.46988 * 54.08513 * 1 2 3 22 22 H 1.09000 * 109.47623 * 174.08484 * 1 2 3 23 23 H 1.08997 * 109.47571 * 294.09064 * 1 2 3 24 24 H 1.09004 * 109.47186 * 239.99367 * 2 1 3 25 25 H 1.08999 * 109.46951 * 120.00029 * 2 1 3 26 26 H 0.97000 * 119.99920 * 179.97438 * 8 7 5 27 27 H 1.07994 * 119.98729 * 0.03085 * 14 13 3 28 28 H 1.08004 * 120.00916 * 179.97438 * 15 14 13 29 29 H 1.08996 * 109.47642 * 89.99787 * 19 18 16 30 30 H 1.08999 * 109.46847 * 210.00097 * 19 18 16 31 31 H 1.09003 * 109.47065 * 329.99440 * 19 18 16 32 32 H 1.08000 * 119.98864 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9845 -0.8354 5 6 1.6546 2.1115 1.2941 6 1 1.5297 1.5221 2.1904 7 6 1.4618 3.4762 1.3339 8 7 1.4934 4.1775 0.2218 9 14 1.1554 4.3289 2.9674 10 1 1.1673 3.3238 4.0604 11 1 2.2207 5.3351 3.2080 12 1 -0.1659 5.0058 2.9324 13 6 3.5406 1.4447 -0.1394 14 6 4.3234 0.8133 0.8095 15 6 5.6993 0.8151 0.6830 16 6 6.2942 1.4491 -0.3949 17 9 7.6397 1.4562 -0.5167 18 6 5.5094 2.0799 -1.3449 19 6 6.1553 2.7707 -2.5182 20 6 4.1332 2.0768 -1.2163 21 1 -0.3633 0.6028 -0.8323 22 1 -0.3634 -1.0222 -0.1059 23 1 -0.3634 0.4194 0.9381 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3573 5.1375 0.2497 27 1 3.8592 0.3186 1.6498 28 1 6.3106 0.3223 1.4246 29 1 6.2633 2.0645 -3.3413 30 1 5.5318 3.6064 -2.8360 31 1 7.1379 3.1412 -2.2259 32 1 3.5207 2.5693 -1.9571 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084351445.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:41 Heat of formation + Delta-G solvation = -51.122031 kcal Electronic energy + Delta-G solvation = -14999.998446 eV Core-core repulsion = 12452.800985 eV Total energy + Delta-G solvation = -2547.197461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.25386 -38.55429 -34.94164 -32.11952 -31.77271 -29.84562 -26.76301 -25.97040 -23.75137 -21.72711 -21.04723 -19.11442 -16.84283 -16.58229 -15.48570 -15.04781 -14.68886 -14.34567 -13.47106 -13.32933 -12.95944 -12.71354 -12.62917 -12.46514 -12.04480 -11.59202 -11.40613 -11.26598 -10.98081 -10.86120 -10.45622 -10.27474 -10.20879 -9.90774 -9.32396 -9.02664 -8.51129 -8.10829 -7.49930 -6.10254 -4.12017 2.02357 2.07809 3.25867 3.34961 3.37614 4.36006 4.49383 4.99182 5.22442 5.35643 5.41331 5.73353 5.94304 6.01104 6.08862 6.11013 6.17304 6.25440 6.32724 6.45127 6.69454 6.73396 6.91037 6.94060 7.00564 7.09187 7.18081 7.32617 7.45694 7.77150 7.80404 7.92964 8.31470 8.93997 9.51051 10.98263 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.009669 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.628418 B = 2895.071385 C = 3291.391631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C 0.063 3.937 4 H 0.064 0.936 5 C -0.503 4.503 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.024 4.024 14 C -0.094 4.094 15 C -0.158 4.158 16 C 0.053 3.947 17 F -0.156 7.156 18 C -0.126 4.126 19 C -0.107 4.107 20 C -0.093 4.093 21 H 0.046 0.954 22 H 0.028 0.972 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.261 0.739 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -4.755 -2.425 6.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.144 4.144 3 C 0.044 3.956 4 H 0.082 0.918 5 C -0.541 4.541 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.025 4.025 14 C -0.112 4.112 15 C -0.177 4.177 16 C 0.034 3.966 17 F -0.135 7.135 18 C -0.127 4.127 19 C -0.163 4.163 20 C -0.112 4.112 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.547 -4.559 -2.500 6.908 hybrid contribution 0.209 0.755 1.006 1.275 sum 4.756 -3.804 -1.494 6.271 Atomic orbital electron populations 1.21588 0.96585 0.98508 1.02401 1.21536 0.95492 0.98430 0.98945 1.18120 0.85923 0.91869 0.99685 0.91773 1.21003 1.46428 0.92055 0.94617 0.92386 1.24977 0.94668 0.97773 0.96117 1.69918 1.49134 1.07016 1.26041 0.86623 0.77754 0.79790 0.84422 1.19641 1.20985 1.21030 1.20885 0.99578 0.91206 0.90793 1.20825 0.91511 0.99708 0.99191 1.20969 0.96055 1.02854 0.97777 1.17373 0.76107 1.04834 0.98297 1.91374 1.30436 1.95442 1.96230 1.19825 0.94411 1.01282 0.97171 1.20628 1.00339 0.99828 0.95548 1.20893 0.92041 0.99471 0.98759 0.93489 0.95241 0.92107 0.94805 0.93548 0.92894 0.85837 0.86279 0.91741 0.91335 0.92092 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.64 37.16 0.36 -2.13 16 2 C -0.11 -2.11 5.12 -26.73 -0.14 -2.25 16 3 C 0.06 1.45 2.01 -92.92 -0.19 1.26 16 4 H 0.06 1.64 7.16 -51.92 -0.37 1.27 16 5 C -0.50 -12.84 7.05 -34.44 -0.24 -13.08 16 6 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 7 C 0.07 1.79 5.45 -17.82 -0.10 1.70 16 8 N -0.88 -24.40 12.87 55.43 0.71 -23.68 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C -0.02 -0.52 4.77 -104.61 -0.50 -1.02 16 14 C -0.09 -1.91 8.87 -39.59 -0.35 -2.26 16 15 C -0.16 -2.96 10.03 -39.52 -0.40 -3.36 16 16 C 0.05 1.02 7.24 -39.42 -0.29 0.73 16 17 F -0.16 -2.87 16.48 2.25 0.04 -2.83 16 18 C -0.13 -2.42 5.89 -104.56 -0.62 -3.03 16 19 C -0.11 -1.67 9.84 36.00 0.35 -1.32 16 20 C -0.09 -1.96 9.32 -39.59 -0.37 -2.33 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 1.20 7.59 -51.93 -0.39 0.80 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.89 7.59 -51.93 -0.39 0.50 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.12 2.38 7.64 -52.49 -0.40 1.98 16 28 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.06 0.91 7.64 -51.93 -0.40 0.51 16 32 H 0.12 2.59 7.94 -52.49 -0.42 2.17 16 LS Contribution 275.83 15.07 4.16 4.16 Total: -1.00 -26.93 275.83 -7.04 -33.97 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.45 Total: -0.29 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.47 Total: -27.09 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.71 Total: -23.68 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.93 -7.04 -33.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084351445.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.152 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds